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41 protocols using m1 70

1

Multiparameter Flow Cytometry Analysis

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Fluorescent dye–labeled antibodies for BCL-6 (K112-91), B220 (RA3-6B2), CD4 (RM4-5), CD11b (M1/70), CD11c (N418), CD40 (3/23), CD44 (IM7), CD80 (16-10A1), CD86 (GL1), CD90.1 (OX-7), CD103(2E7), CXCR5 (2G8), Foxp3 (FJK-16s), GATA3 (TWAJ), GL-7 (GL7), ICOS (C398.4A), ICOSL (HK5.3), IFN-γ (XMG1.2), IgD (11-26c.2a), IgE (RME-1), IL-4 (11B11), MHCII (M5/114.15.2), PD-1 (RMP1-30), and TCRβ (H57-597) were purchased from BD Biosciences, BioLegend, Thermo Fisher Scientific, and Tonbo Biosciences. For intracellular staining, surface-stained cells were fixed and permeabilized with Foxp3/transcription factor staining buffer set (Thermo Fisher Scientific). For intracellular cytokine staining, cells were stimulated with cell stimulation cocktail plus protein transport inhibitors (Thermo Fisher Scientific) for 4 hours in RPMI 1640 containing 10% FBS, penicillin (100 U/ml), streptomycin (100 μg/ml), and 55 μM β-mercaptoethanol. Dead cells were excluded by Ghost Dye Violet 510 (Tonbo Biosciences). Stained cells were analyzed using LSRFortessa or FACSCanto II (BD Biosciences), and data were analyzed using FlowJo software (Tree Star).
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2

Multicolor Flow Cytometry Phenotyping

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Monoclonal antibodies (mAbs) against CD4 (1:200, GK1.5), CD11b (1:200, M1/70), CD11C (1:200, HL3), CD25 (1:200, PC61), CD80 (1:200, 16-10A1), CD86 (1:200, GL1), and Gr-1 (1:200, RB6-8C5); and I-Ab (MHC class II) (1:200, AF6-120.1), IFN-γ (1:200, XMG1.2), propidium iodide (PI) (1:200), annexin V (1:200), and Ly6-G (1:200, 1A8), B7-H1 (1:200, MIH5) were purchased from BD Biosciences (San Jose, CA, USA). The mABs against CD3 (1:200, 17A2), CD40 (1:200, 3/23), F4/80 (1:200, BM8), and Ly6-C (1:200, HK1.4) were purchased from BioLegend (San Diego, CA, USA). Foxp3 (1:200, FJK-16s) was purchased from Invitrogen (San Diego, CA, USA). Intracellular staining protocols for regulatory T-cells were followed for Foxp3 staining. For carboxyfluorescein succinimidyl ester (CFSE) labeling, splenic T-cells (107/mL) from BALB/c mice were incubated with 0.5 µM CFSE (Invitrogen, San Diego, CA, USA) for 10 min at room temperature. A flow analysis was performed using the BD FACSCanto II flow cytometer (BD Bioscience, Franklin Lakes, NJ, USA).
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3

Multiparameter Flow Cytometry Analysis

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To assess intracellular cytokines, leukocytes were stimulated for 4 hrs with phorbol 12-myristate 13-acetate (10 ng/ml), ionomycin (1 μg/ml) and brefeldin A (10 μg/ml). Cells were washed, fixed in 2% paraformaldehyde, permeabilized with 0.5% saponin buffer and stained with antibodies specific for CD4 (Biolegend – RM4-5), IFN-γ (eBioscience – XMG1.2), IL-4 (eBioscience – 11B11), IL-13 (eBioscience – eBio13A) and IL-17A (Biolegend – TC11-18H10.1). To assess cell populations and macrophage depletion, leukocytes isolated from lung tissue or 72 hrs thioglycollate elicited peritoneal cells (3% w/v) were labelled with a viability dye (Invitrogen – LIVE/DEAD Blue or Aqua), pre-incubated in 2% normal rat serum plus unlabelled anti-CD16/32 antibody (eBioscience – 93), and stained with combinations of antibodies specific for: CD11b (Biolegend – M1/70), CD11c (BD – HL3), CD45 (Biolegend - 30-F11), CD64 (Biolegend – X54-5/7.1), F4/80 (Biolegend – BM8), Gr-1 (Biolegend – RB6-8C5), Ly6C (Biolegend – HK1.4), Ly6G (BD – 1A8), MHC class II I-Ab (BD – AF6-120.1) or I-A/E (Biolegend M5/114.15.2), Siglec-F (BD – E50-2440), and TCRβ (eBioscience – H57-597). Flow cytometry was performed using a FACSCanto II or LSRII (BD Biosciences) and data were analyzed using FlowJo (Tree Star).
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4

Cell Cycle Analysis of IL10-/- BMDMs

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Il10-/- BMDMs were cultured for 16 hours with 500nM (+)-JQ1. Cells were washed with cold 1x PBS followed by staining with LIVE/DEAD Fixable Blue Dead Cell Stain Kit (1:1000; Invitrogen L23105). Cell cycle changes in (+)-JQ1 treated Il10-/- BMDMs were assessed using the BD Pharmigen BrdU Flow kit according to the manufacturer (559619). Briefly, Il10-/- BMDMs were co-cultured with BrdU and treated with (+)-JQ1 for 16 hours followed by fixation and permeabilization. Cells were treated with DNase followed by staining with FITC-conjugated anti-BrdU.
Bulk LPMCs from Il10-/- mice were washed with cold 1x PBS and stained for viability followed by cell-surface marker staining for CD45 (1:100; Clone 30-F11, BioLegend), CD3ε (1:300; Clone 145-2C11, BioLegend), CD19 (1:200; Clone 6D5, BioLegend), CD11b (1:200; M1/70, BD Biosciences), CD11c (1:200; Clone N418, BioLegend), and F4/80 (1:200; Clone BM8, BioLegend) diluted in staining buffer (5% FBS/PBS). All samples were fixed with 4% PFA. Data was acquired with the FACSDIVA software using the BD LSR II and analyzed using FlowJo version 10.7.1.
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5

MDSC Isolation, Culture, and Analysis

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CD11b+Gr-1high Ly6Cint MDSC were isolated to >90% purity and incubated with 1 µM CFSE (Invitrogen) at 37°C for 20 min in serum-free media. Excess dye was removed by washing labeled cells with complete media. A total of 1 × 105 Gr-MDSC were incubated with basic media (DMEM/F12/10% FBS) or with CM isolated from the supernatants of primary PDA cells (PDA-CM) or metastatic PDA cells (Met-CM); the recombinant murine cytokines, GM-CSF, G-CSF, or M-CSF (R&D Systems, 50 ng/ml); or blocking antibodies to GM-CSF, G-CSF, or M-CSF (R&D Systems, 10 µg/ml). After 48h, cells were stained for Gr-1-e450 (BD Biosciences RB6-8C5, 1:200) and CD11b-PE (BD Biosciences M1/70, 1:200), and Annexin-V-APC and CFSE dilution were measured by gating on live Gr-1+CD11b+ cells to assess for apoptosis and proliferation, respectively.
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6

Isolation and Characterization of Mouse Bone Marrow Mesenchymal Stromal Cells

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MBMMSCs were isolated from DBA/1j mice. Long bones of 4–6 weeks male mice were collected to harvest bone marrow. The hindlimbs of male mice were split by cutting off the knee. And the ends of bone were cut with a sharp pair of scissors. Be careful not to splinter the bones during the cutting process. Then, the bone marrow was washed with 1 ml syringe, and the washing solution was culture medium α-MEM. The cells were filtered through a 70 μm strainer and collected with a 50 ml centrifuge tube. Bone marrow cells are diluted in complete culture medium (α-MEM, 10% FBS, 100 U/ml penicillin, and 100 μg/ml streptomycin) and cultured at 37°C with 5% CO2. To confirm the MSCs, FACS were conducted to detect the feature of MSCs, such as CD105+ (MJ7/18, BD Biosciences, USA), CD73+ (TY/23, BD Biosciences, USA), CD90+ (53-2.1, BD Biosciences, USA), CD34 (RAM34, BD Biosciences, USA), and CD11b (M1/70, BD Biosciences, USA) in Figure S1. Rat IgG2a κ Isotype (R35-95) and Rat IgG2b κ Isotype (A95-1) were also bought from BD Biosciences. MBMMSCs were maintained in UltraCULTURE™ medium (Lonza, USA).
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7

Dystrophic and Bortezomib-Treated Muscle Analysis

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Quadriceps and triceps muscle from dy2J/dy2J, bortezomib-treated dy2J/dy2J, wild-type (WT) and bortezomib-treated WT mice were dissected after euthanasia and frozen in optimal cutting temperature compound (Tissue-Tek OCT; Sakura Finetek, Torrance, CA) in liquid nitrogen. Transverse cryosections of 7 μm were stained with hematoxylin and eosin (H&E), Masson’s trichrome (using an HT15 commercial kit; Sigma-Aldrich, St. Louis, MO) or biotinylated wheat germ agglutinin (WGA), which was detected with fluorescein avidin D (Vector Laboratories, Burlingame, CA). Sections were also processed for immunofluorescence analyses according to standard procedures with rat monoclonal anti-tenascin-C (MTn15) [11 (link)] and rat monoclonal anti-CD11b (M1/70, BD Pharmingen, San Diego, California). Anti-tenascin-C, anti-CD11b and WGA stained sections were analyzed and images captured with a Zeiss Axioplan fluorescence microscope (Carl Zeiss Microscopy, Jena, Germany) using an ORCA 1394 ER digital camera (Hamamatsu Photonics, Hamamatsu City, Japan) and Openlab software version 3 (Improvision, Coventry, UK).
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8

Mycobacterium tuberculosis Infection in Mice

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Mice were infected with H37Rv Mtb-mCherry and sacrificed at D10 and D14. Lungs were excised and submerged in BD Cytofix fixative solution diluted 1:3 with PBS for 24hr at 4°C. Lungs were washed 2x in PBS and dehydrated in 30% sucrose for 24hr prior to OCT embedding and rapid freezing in a methylbutane-dry ice slurry. 20um sections were stained overnight at RT (with the following antibodies: CD11c BV480; HL3 (BD), CD11b BV510; M1/70 (BD), CD45.2 AF700; 104 (BioLegend), MHC-II APC-Fire750; M5/114.15.2 (BioLegend), Siglec-F BV421; E50-2440 (BD), pS6 AF488; 2F9 (Cell Signaling), CD3 CF633; 17A2, CD4 CF660C; RM4-5) and coverslipped with Fluoromount G mounting media (Southern Biotec). Images were acquired on a Leica SP8X confocal microscope, compensated for fluorophore spillover using LAS X (Leica), and analyzed with Imaris (Bitplane) and FlowJo (11 (link)). More details can be found in Supplemental Fig. 3.
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9

Multicolor Flow Cytometry for Lung Immune Cells

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The lung cells were isolated by digestion with 400 U/ml collagenase D in PBS containing Ca2+ Mg2+ at 37°C for 25 min, followed by filtration through a 70-µm cell strainer. The lung cells or BAL cells were resuspended in PBS containing 2% FBS. Nonspecific binding was blocked by incubating with 12.5 µg/ml Fc Block (93, eBioscience) for 15 min at 4°C. Samples were incubated with anti-mouse antibodies including FITC-conjugated CD11b (M1/70, BioLegend), CD3 (17A2, BioLegend), PE-conjugated CD64 (X54-5/7.1, BioLegend), NK1.1 (PK136, BioLegend), PerCP-conjugated CD45 (30-F11, BioLegend), PE/Cy-7-conjugated CD11c (N418, BioLegend), APC-conjugated MHCII (M5/114.15.2, BioLegend), Ly6G (1A8, BioLegend), APC/Cy-7-conjugated CD19 (6D5, BioLegend), CD11b (M1/70, BD Pharmingen), and Pacific Blue-conjugated Siglec-F (E50-2440, BD Pharmingen) for 30 min at 4°C. Samples were washed twice with FACS buffer, and flow cytometry was performed after gating on the CD45+ leukocyte population using a BD Canto II flow cytometer (BD biosciences). Results were analyzed with FlowJo software ver. 9.3.2.
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10

Multicolor Immunofluorescence Staining Protocol

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Slides containing tissue sections (10–25 μm thickness) were blocked with 3% normal goat serum (NGS) in 1X PBS + 0.05% Tween-20 (PBS-T). For intracellular antigens 0.2% triton was added to the blocking buffer. Primary antibody dilutions were prepared as follows in 5% NGS in 1X PBST: rat anti mouse CD11b clone M1–70 (BD Pharmingen; #553308) – 1:100, F4/80 clone A3–1 (BioRAD; MCA497G) – 1:400, and IL-33 (abcam; ab187060) – 1:200. Sections were stained with primary antibodies overnight at 4°C, and subsequently washed with 3% NGS in 1X PBS-T. Secondary antibodies (Goat anti-rat Alexa-647, Invitrogen) were all prepared in 5% Normal Goat Serum (NGS) in 1X PBST at a dilution of 1:500. Three 5-minute washes with PBST were performed after each antibody incubation. Sections were incubated in secondary antibodies for 1 hour at room temperature, and subsequently washed with 1X PBST. For multicolor immunofluorescence staining for primary and secondary of each antigen were performed in sequence. Sections were either mounted with antifade mounting medium with DAPI (Fisher Scientific; H1200) or counterstained with 2 μg/ml DAPI in 1X PBST for 30 mins at room temperature and then mounted in Antifade Gold mounting medium.
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