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28 protocols using gemini em microplate reader

1

Intestinal Permeability Measurement Using FITC-Dextran

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Intestinal permeability was measured using 4-kDa FITC-dextran (Sigma, USA) as done in a previous study [23 (link)]. Briefly, the mice were gavaged with FITC-dextran 6 h after fasting. After 1 h, blood samples were collected from the portal vein under anesthesia. Plasma was collected through centrifugation of the samples. The FITC-dextran concentration in the plasma was analyzed using a fluorescence spectrophotometer (Gemini EM microplate reader, Molecular Devices, CA, USA) at an excitation wavelength of 485 nm and an emission wavelength of 535 nm.
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2

Assaying Chymotrypsin-like Proteasome Activity

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Cells were washed 1× with PBS and resuspended in 20S proteasome lysis buffer (20 mM Tris, pH 7.5, 0.1 mM ethylenediaminetetraacetic acid, 20% glycerol, and 0.05% NP-40 supplemented each time with fresh 1 mM β-mercaptoethanol and 1 mM adenosine triphosphate). Cells were lysed by freezing and thawing 3× on dry ice. Samples were then spun for 1 min at 12,000 rpm. Samples were aliquoted to duplicate wells (100 μL/well) of a black 96-well plate. Next, 98 μL substrate buffer (50 mM HEPES, pH 7.5, and 50 mM EGTA, pH 7–8) were added to each well along with 2 μL suc-LLVY-amc fluorogenic substrate for chymotrypsin-like activity (AG Scientific, San Diego, CA, USA). After 1 h incubation with fluorogenic substrates, fluorescence was read on a Gemini EM Microplate Reader (Molecular Devices, Sunnyvale, CA, USA) at an excitation of 380 nM and an emission of 460 nM. For experiments that indicate they were standardized to DMSO, all samples were divided by the fluorescence value for control (DMSO treated) cells.
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3

Extracellular Superoxide Detection in XIST-Modulated Cells

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LncRNA-XIST was knocked-down in A549 cells and overexpressed in H1299 cells respectively, L-012 dye was then employed to detect extracellular NADPH oxidase-derived superoxide to reflect the extent of oxidative stress according to the manufacturer’s instruction. Briefly, A549 and H1299 cells were cultured under the standard conditions and diluted to the concentration of 4–6 × 104 cells/well into 96-well plates (Thermo, USA) in phenol free DMEM medium. After that, 500 μM of L-012 was added and incubated with the cells for 10 min, the luminescence was detected by a Gemini EM microplate reader (Molecular Devices, USA) at excitation wavelength of 488 nm and emission wavelength of 525 nm respectively.
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4

ARPE-19 Cell Proliferation Assay

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The ARPE-19 cells were harvested and seeded into the 96-well plates at the density of 2 × 103 per well. The high-glucose (50mM) were then incubated with the cells for 0h, 12h, 24h and 36h, respectively. The commercial CCK-8 kit (AbMole, USA) was employed to measure cell proliferation according to the manufacturer’s protocol. Briefly, 10 μl of CCK-8 solution was added into each well for 4 h. After that, the plates were gently mixed and the Gemini EM microplate reader (Molecular Devices, USA) was used to measure the optical density (OD) values at the absorbance of 450 nm. The OD values were used to reflect the proliferation abilities of ARPE-19 cells.
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5

Quantitative Glutathione Measurement

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Cells were washed 1× in PBS and resuspended in 1 mL PBS. Next, 2 μL monochlorobimane solution (2.2 mg monochlorobimane in 194.12 μL acetonitrile) was added to each sample. Samples were vortexed and incubated at 37 °C for 15 min. The reaction was halted by adding 50 μL trichloroacetic acid and vortexing. Samples were spun for 5 min at 10,000 rpm, and 1 mL supernatant was added to a glass tube containing 1 mL dichloromethane. Glass tubes were vortexed and centrifuged for 2 min at 3,500 rpm. For each sample, 200 μL of the top aqueous layer was plated in duplicate wells in a white 96-well plate. Fluorescence was read on a Gemini EM Microplate Reader (Molecular Devices, Sunnyvale, CA, USA) at an excitation of 360 nM and an emission of 460 nM. Glutathione concentrations were determined by comparing samples to a standard curve composed of varying concentrations of glutathione ethyl ester dissolved in PBS.
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6

Antiviral and Cytotoxicity Assays for Pharmaceutical Compounds

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Based on the HPLC assay results for CG and MIV-150, the in vitro release eluent and VF samples were diluted to generate dose-response curves from which CC50 and IC50 with 95% confidence intervals (CI) were computed. We tested the antiviral activity using the TZM-bl assay for anti-HIV-1ADA-M activity [62 ] and anti-HPV16 PsV activity using the luciferase assay (HeLa cells) [26 (link), 44 (link)]. The dye (PrestoBlue) uptake assay was used to test the in vitro susceptibility of HSV-2 [63 ]. Briefly, Vero cells were seeded (104 cells/well) in 100 μl of medium and incubated overnight at 37°C, 5% CO2, and 98% humidity. Diluted release samples were added to cells immediately before adding 85 pfu/well of HSV-2 G. Cell controls and cytotoxicity samples received medium only (no virus). The plates were incubated for 6d at 37°C, 5% CO2, and 98% humidity. Cell monolayers were washed with DMEM without phenol red then 100 μl of 1× Presto Blue reagent was added. Fluorescence (emission 600 nm and excitation 560 nm) was read on Gemini EM microplate reader, Molecular Devices (Sunnyvale, CA). All samples and controls were tested in triplicates.
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7

Measuring Cortical ROS in MCAO Mice

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The wild-type (Uqcrc1+/+) and heterozygous (Uqcrc1+/−) mice were randomly assigned to the control and MCAO groups. The control group of mice was not subjected to anesthesia or surgical procedure. The OxiSelect™ In Vitro ROS/RNS Assay Kit (catalog number: STA-347, Cell Biolabs Inc., San Diego, CA) was chosen to detect ROS as we did before [59 (link)]. Briefly, the left frontal cortex area 1 (Fr1) at Bregma 1 to −1 was harvested 24 h after MCAO or from control mice. Tissue was homogenized on ice in cold phosphate-buffered saline (10 mg/100 μL), and centrifuged at 10,000 g for 5 min at 4°C. Fifty microliter supernatant was mixed with 50 μL catalyst in a well of 96-well plates and incubated at room temperature for 5 min. Subsequently, 2’, 7’-dichlorodihydrofluorescin diacetate solution (100 μL) was added to each well and was reacted for 45 min in the dark. Fluorescence at 486 nm excitation and 538 nm emission was read on a fluorescence plate reader (Gemini EM Microplate Reader, Molecular Devices, Sunnyvale, CA). Measurements were performed in triplicate and then averaged as the value for each mouse.
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8

UVB-induced ROS Measurement in HS68 Cells

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After UVB-irradiation and PRE treatment (0.5–5 μg/mL), the HS68 cells were stained with 40 μM 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA; Sigma-Aldrich) for 30 min. ROS production was analyzed by Gemini EM Microplate Reader (Molecular Devices) with excitation and emission wavelengths of 488 nm and 520 nm, respectively.
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9

Measuring Hippocampal Oxidative Stress via DCFH-DA

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The GENMED oxidative stress reactive oxygen species (ROS) primary fluorescence assay kit for living tissue (GMS10016.4, GENMED Scientifics Inc., MA, USA) was chosen to detect ROS. 2′,7′-Dichlorofluorescein diacetate (DCFH-DA) is a stain that can penetrate through the cell membrane freely. Green fluorescence is produced once DCFH-DA is oxidized by hydrogen peroxide, peroxide groups, peroxynitrite, etc. Briefly, the hippocampus was freshly harvested 24 h after stereotaxic injection and cold GENMED diluent (10 mg/100 μL) was quickly added. Tissues was homogenized with a DOUNCE homogenizer on ice. The protein in the hippocampus was determined by the GENMED Bradford protein assay kit (GMS30030.1, GENMED Scientifics Inc., MA, USA). Fifty microliters of the supernatant was mixed with 50 μL catalyst in a well of 96-well plates and incubated at room temperature for 5 min. Subsequently, GENMED staining working solution containing DCFH-DA (100 μL) was added to each well and reacted for 20 min in the dark. Fluorescence at 490 nm excitation and 520 nm emission was read on a fluorescence microplate reader (Gemini EM Microplate Reader, Molecular Devices, Sunnyvale, CA, USA) and observed under an Olympus BX5 fluorescence microscope imaging system (Olympus America, Melville, NY, USA).
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10

Rapid GTP Hydrolysis Measurement

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Rapid GTP hydrolysis was measured directly using both an SX-20 stopped-flow spectrofluorometer (Applied Photophysics, Leatherhead, UK) equipped with a quench flow adaptor or a KinTek RQF-3 (KinTek Corp., Austin, TX) at 25°C. A reaction containing 25 mM Tris pH 7.5, 100 mM NaCl2, 2 mM MgCl2, 500 μM GTP, and 1 μM ATL was quenched with a final concentration of 10% trichloroacetic acid and neutralized with 1.5 M Tris pH 8.8. Longer time points were initiated and quenched manually. Free phosphate was measured with 5 μM PBP•MDCC using a Gemini EM microplate reader (Molecular Devices, Sunnyvale, CA) with sensor excitation 430 nm and fluorescence being recorded at 468 nm. Data collected on each instrument (8 technical replicates using the SX-20 and 3 technical replicates using the KinTek RQF-3), were normalized and averaged.
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