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23 protocols using shp 1

1

Enzyme-linked Immunosorbent Assay Protocols

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Keratinocyte-derived chemokine (KC) and macrophage inflammatory protein-2 (MIP-2) antibodies for ELISA assays were purchased from R&D Systems, Minneapolis, MN. Mouse IL-6, IL-10, tumor necrosis factor-α (TNF-α), monocyte chemoattractant protein (MCP-1), MIP-2 and IL-17A ELISA kits were purchased from BD Bioscience, San Diego, CA. Antibodies for phosphorylated (p)-SHP-1, SHP-1, p-SHP-2, SHP-2, p-Akt and Akt were purchased from Cell Signaling Technology (Danvers, MA). Antibody for beta-actin was purchased from Abcam Company (Cambridge, MA). All other chemicals were of analytical reagent grade and purchased from Sigma Chemical, St Louis, MO.
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2

Luteolin Modulates Interferon Signaling

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Luteolin (≥ 98%, HPLC) was purchased from Sigma-Aldrich (Shanghai, China) and dissolved in DMSO as a stock solution. Enzyme-linked immunosorbent assay (ELISA) kits for human and mouse IFN-α and IFN-β were purchased from R&D Systems (Minneapolis, MN). Antibodies against p-STAT1Tyr701, STAT1, p-JAK1(Tyr1034/1035), JAK1, SOCS1, SOCS2, SOCS3, SOCS6, SHP-1, SHP-2 were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against CIS and GAPDH were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). A Cell Counting Kit-8 (CCK-8) and horseradish peroxidase-conjugated goat anti-rabbit antibody were purchased from Beyotime Institute of Biotechnology (Haimen, China).
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Dovitinib and Autophagy Modulation in Cancer

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Dovitinib (TKI258) was kindly provided by Novartis Pharmaceuticals. Bafilomycin A1 was purchased from Invivogen (California, USA). Thiazolyl blue tetrazolium bromide (3-(4,5-dimethylthiazol-2-yl)-2,5-diphe- nyltetrazolium bromide, MTT) and acridine orange were purchased from Sigma-Aldrich (Missouri, USA). SHP-1 inhibitor, the STAT3-specific inhibitor, was purchased from Merck Millipore (Massachusetts, USA). G418, being used for selecting transformed with STAT3 plasmid cell line, was purchased from Amresco (Ohio, USA). Antibody for immunoblotting, such as PARP, was purchased from Santa Cruz (Dallas, USA). Other antibodies, such as beclin 1, cyclin D1, Mcl-1, survivin, p-STAT3Tyr705, STAT3, SQSTM1/p62, and SHP-1, were from Cell Signaling (Massachusetts, USA).
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Protein Expression Analysis by Western Blot

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Western blot was performed as described previously.7 (link) For total protein extraction, cells were incubated in RIPA buffer containing 1% PMSF on ice for 30 mins. Samples were then separated by SDS-PAGE. Anti-STAT3 (Abcam, Cambridge, MA, USA, cat no: ab119352, dilute at 1:1000), p-STAT3 (Abcam, Cambridge, MA, USA, cat no: ab76315, dilute at 1:1000), SHP-1 (Cell signaling, USA, cat no: 3759, dilute at 1:1000), TWIST1 (Abcam, Cambridge, MA, USA, cat no: 46702, dilute at 1:1000), were used as primary antibodies and β-actin (Cell signaling, USA, cat no:4970, dilute at 1:1000) was used as a control.
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Protein Expression Profiling of HCC Cells

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Total lysates of HCC cells were prepared, and proteins were extracted after centrifugation. 30 µg proteins of each sample were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotted with indicated antibodies. The visualization of protein signals was performed using a chemiluminescence reaction system following the manufacturer's recommenddations. Antibody for cleaved PARP, cleaved Caspase-3, CD133, Sox-2, Oct-4, Vimentin, SHP-1, JAK2, STAT3, p-STAT3, and β-Actin were purchased from Cell Signaling Technology (Danvers, MA). Slug, Snail, p-JAK2, and the second antibodies were acquired from Abcam (Cambridge, UK).
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6

Western Blotting and qPCR Analysis of Signaling Proteins

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Western blotting was performed as described previously using specific antibodies against RORα, actin (Santa Cruz Biotechnology, Santa Cruz, CA, USA), pSTAT3, STAT3, JAK1, JAK2, SRC, PIAS3, and SHP-1 (Cell Signaling Technology, Beverly, MA, USA)32 (link). Quantitative real-time PCR (qPCR) was performed using an ABI StepOnePlusTM Real-time PCR system (Applied Biosystems, Foster City, CA, USA) using specific primers (Supplementary Table S1). Relative mRNA levels of target genes were estimated using the equation 2−ΔCt (ΔCt = Ct of target gene minus Ct of β-actin or 18 S rRNA) and are presented relative to the level of the control group, which was designated as 1. The detailed method for qPCR is described in Han et al.32 (link).
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7

SYK-LILRB2 Signaling Pathway Analysis

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HMC3 cells were seeded into a 6-well plate at 1 × 106 cells/well in EMEM without FBS. After 1-hour incubation with designated treatments, the supernatant was removed, and cells were washed three times by DPBS. The cell lysate was obtained by lysing cells using NP-40 lysis buffer (1% NP40, 50 mM Tris-HCl, pH = 8, 150 mM NaCl) with Halt™ Protease and Phosphatase Inhibitor Cocktail (100X) (ThermoFisher). After removing debris by centrifugation, the total protein amount normalized by Pierce BCA Protein Assay Kit (ThermoFisher). Protein samples were resolved by 10% SDS-polyacrylamide gels (Biorad) and later transferred onto Immun-Blot PVDF membranes (Biorad). Proteins were probed with specific primary antibodies and secondary antibodies diluted in 5% BSA TBST [21 (link), 24 (link), 29 (link)]. The primary antibodies used are: SYK (1:1000, Cell Signaling 13198S), Phospho-Syk (Tyr525/526) (1:1000, Thermo Fisher MA5-14918), β-Actin (1:1000, Cell Signaling 4970S), SHP1 (1:1000, Cell Signaling 3759S), Phospho-SHP-1 (Tyr564) (1:1000, Cell Signaling 8849S), and LILRB2 (1:1000, Thermo Fisher PA5-46983).
The immunoreactive bands were visualized with the West Pico PLUS Chemiluminescent Substrate (ThermoFisher). The immunoreactive bands were quantified using ImageJ. Three independent treatment replicates were conducted with the representative immunoblot shown.
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8

Isolation and Analysis of Mouse Macrophages

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Mouse macrophages were isolated from BMMCs of 5TGM1/KaLwRij MM mouse models with CD11b MicroBeads (Miltenyi). Mouse macrophages were lysed in the mammalian cell extraction buffer (BioVision) with Protease and Phosphatase Inhibitors (ThermoFisher). Protein lysates were incubated on ice for 10 min and centrifuged at 14,000 × g for 10 min at 4 °C. Proteins were separated with 4–12% Bis-Tris Gel (Invitrogen) at 120 V for 1.5 h. And then transferred to a nitrocellulose (NC) membrane for 1.5 h at 200 mA. The membrane was blocked for 1.5 h with 5% milk at room temperature. Primary antibodies SHP-1 (Cell Signaling Technology, catalog # 3759, clone # C14H6, 1:1000), SHP−2 (Cell Signaling Technology, catalog # 3397, clone # D50F2, 1:1000), Phospho-SHP-1 (Tyr564) (Cell Signaling Technology, catalog # 8849, clone # D11G5, 1:1000), Phospho-SHP-2 (Tyr580) (Cell Signaling Technology, catalog # 5431, clone # D66F10, 1:1000), β-Actin (Cell Signaling Technology, catalog # 4967, 1:1000), were incubated overnight at 4 °C. Anti-rabbit IgG, HRP-linked antibody (Cell Signaling Technology, catalog # 7074, 1:1000) were incubated for 2 h. ECL Substrates (Bio-Rad, catalog # 1705060) were used for exposure. Western Blotting imaging was exposed with a Bio-Rad ChemiDoc XRS+. The images were analyzed by Image Lab Software (Bio-Rad).
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9

Antibody Analysis of Cell Signaling

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The following antibodies were used: EPAC1 (# 4155), EPAC2 (# 4156), phospho-STAT3 (Tyr705) (# 9131), STAT3 (# 4904), SHP-1 (# 3759), SHP-2 (# 3397), SOCS3 (# 2923), LCK (# 2752), p-LCK (Try505) (# 2751), JAK2 (# 3230), SMAD2 (# 5339), p-SMAD2 (Ser465/467) (# 3108), and SMAD4 (# 9515) (Cell Signaling Technology, Inc., Danvers, MA). Actin–Cy3 (C 5838) (Sigma-Aldrich, St. Louis, MO).SMAD7 (sc-11392) (Santa Cruz Biotechnology, Dallas, TX).
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10

Limonin Inhibits Angiogenesis and Tumor Growth

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Limonin (purity >99.37%) was purchased from Shanghai Winherb Medical Science. A 50 mmol/L stock solution was prepared in dimethyl sulfoxide (DMSO) (Sigma, St. Louis, MO), Regorafenib were purchased from Selleck Chemicals (Houston, TX). Growth factor-reduced Matrigel was purchased from BD Biosciences (San Diego, CA). Primary antibodies against phosphor-specific anti-VEGFR2 (Tyr1175), VEGFR2, phospho-STAT3 (Tyr705), STAT3, Bcl2, BCL-xl, MMP-9 and SHP-1 were obtained from Cell Signaling Technology (Danvers, MA, USA; 1:1,000 dilution). VEGF (A-20), IGFR, phospho-IGFR(Tyr1316) was purchased from Santa Cruz Biotechnology (Santa Cruz, CA; 1:1,000 dilution). β-actin and GAPDH were obtained from Hangzhou Huaan Biotechnology Company(China; 1:1,000 dilution). Goat Anti-Rabbit IgG and HRP Goat Anti-Mouse IgG were provided from Abbkine (1:2,500 dilution). Anti-CD31 and anti-Ki67 were provided by Abcam (UK; 1:200 dilution). SiRNA and scrambled control was purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Recombinant human VEGF (VEGF165) was acquired from R&D Systems (MN, USA). All other reagents were obtained from Sigma-Aldrich (St Louis, MO, USA).
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