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6 protocols using streptavidin pecy5

1

Tumor Cell Profiling by Flow Cytometry

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Cells were stained with a panel of antibodies in PBS containing 2% FBS, 1% penicillin-streptomycin, and 1 mM EDTA. Tumor cells from primary tumor samples were identified by gating out leukocytes, endothelial, and stromal cells expressing human lineage markers: CD2 (RPA-2.10), CD3 (UCHT1), CD18 (6.7), CD31 (WM59), CD45 (HI30), and CD64 (10.1). Tumor cells from xenografts passaged in mice were identified by gating out stromal cells expressing mouse lineage markers: H-2Kd (SF1–1.1), H-2Kb (AF6–88.5) and muCD45 (30–F11). Anti-CD31 was obtained from eBioscience, and all other antibodies were obtained from BD Pharmingen. All lineage antibodies were biotinylated or directly conjugated to PE/Cy5. Labeled cells were then washed and stained with streptavidin-PE/Cy5 (BioLegend). DAPI was obtained from Invitrogen.
After gating out leukocytes, endothelial, stromal, and non-viable cells, the tumor cells were profiled for expression of TLR2. Anti-TLR2 (T2.5) was obtained from eBioscience. Cells were analyzed on a BD LSRFortessa. Events collected were analyzed using FlowJo Version 9.6.4 software (Tree Star).
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2

Isolation and Sorting of Hematopoietic Stem Cells

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Cell sorting protocols were as previously described [28 (link), 32 (link)]. Briefly, bone marrow was flushed in PBS supplemented with 0.1% bovine serum albumin and 2 mM EDTA, filtered through 40 μm cell strainers, and subjected to red blood cell lysis in ACK buffer (0.15 M NH4Cl, 10 mM KHCO3, 0.1 mM EDTA). The samples were stained with biotin anti-mouse Lineage Panel (BioLegend), PE-Cy7 cKit (clone 2B8, BioLegend), APC-Cy7 Sca-1 (D7, BioLegend), FITC CD48 (HM48-1, eBioscience), APC CD150 (TC15-12F12.2, BioLegend), PE Flt3 (A2F10, eBioscience), Brilliant Violet 421 CD34 (RAM34, BD Biosciences), and streptavidin-PECy5 (BioLegend). Cell sorting was performed on FACSAria, with the FACS Diva software (BD Biosciences).
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3

Sorting Thawed PBMC Subpopulations

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Thawed PBMCs were viability stained and then surface stained for 30 min with fluorescently labeled antibodies against CD3 APC-H7, CD4 Alexa Fluor 680, CXCR5 Biotin, CD19 PE, CD20 V450, CD27 APC (all BD) CD45RO (Beckman Coulter), PD1, and ICOS (BioLegend) for 30 min on ice, followed by a secondary staining step with Streptavidin-PECy5 (BioLegend). After washing, only single, live lymphocytes were sorted on a FACSAria II into high-purity populations, dependent on their unique surface marker expression profile. Each sample was rerun to control for purity.
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4

Multicolor Flow Cytometry Analysis

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After isolation of the indicated tissues, cells were washed in PBS, and subsequently stained with fixable viability dye eFluor455UV (1:500 dilution) (eBiosciences) and mAb (Clone 93) (ThermoFisher) directed against the FcγRIII/II CD16/CD32 (0.5 µg mAb/106 cells) for 20 min at 4 °C. Cells were washed in PBS/2% FBS supplemented with 0.1% w/v sodium azide and 10 mM EDTA, incubated with the relevant mAb for 20 min at 4 °C and washed again twice. When primary antibodies were biotin-coupled antibodies, cells were incubated with Streptavidin-PE/Cy5 (1:800) (BioLegend) for 20 min at 4 °C. Data were acquired with the BD LSRFortessaTM X-20 flow cytometer (BD Biosciences) and analyzed using FlowJo software version 10.5.3 (Tree Star Inc.). Cell sorting was carried out with the BD FACSAria™ III equipment. In all experiments, forward scatter (FSC)-H versus FSC-A was used to gate on singlets, with dead cells excluded using the fluorescence-coupled fixable viability dye. Lineage positive (CD3, CD19, NK1.1, Ly6G, and Ter119) cells were removed from further analysis.
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5

Mouse Hematopoietic Stem Cell Isolation

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Mouse bone marrow was flushed from femurs, tibiae, humeri, and ilia of mice with a 26-G needle in PBS supplemented with 0.1% BSA and 2 mM EDTA, filtered through 40-μm cell strainers, and subjected to red blood cell lysis in ACK buffer (0.15 M NH4Cl, 10 mM KHCO3, and 0.1 mM EDTA). The cells were stained with Biotin anti-mouse Lineage Panel (BioLegend) and lineage-positive cells depleted using biotin-binding Dynabeads (Life Technologies). The lineage-negative fraction was stained with PeCy7-cKit/CD117 (clone 2B8, BD Biosciences), APC-Sca1 (E13–161.7, BioLegend), FITC-CD48 (HM48-1, eBioscience), PE-CD150 (mShad150, eBioscience), and streptavidin-PECy5 (BioLegend). Propidium iodide or DAPI was added immediately before sorting for dead cell exclusion. Cell sorting was performed on the FACSAria instrument and was analyzed with FACS Diva software (BD Biosciences).
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6

Investigating Breast Cancer Cell Signaling Pathways

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H104B5F5/M10 human mammary epithelial cells were purchased from Bioresource Collection and Research Center (Hsinchu, Taiwan) and were cultured in α-minimum essential medium containing 10% fetal calf serum (FCS) and antibiotics. MCF-7, MDA-MB-231 and SKBR-3 breast cancer cells were obtained from the same resource and were cultured in Dulbecco’s modified Eagle’s medium/F-12 medium containing 10% FCS and antibiotics. Synthesis of AL10 was described as previous study [15] (link). Sialidase was obtained from Takara Bio Inc. (Shiga, Japan). Human CCL19 and CCL21 recombinant proteins were purchased from R&D Systems (Minneapolis, MN). Anti-ST3Gal-I and anti-CCR7 antibodies were obtained from Epitomics, Inc. (Burlingame, CA). Anti-ERK, p-ERK, p38, p-p38, cyclin D1, cyclin A, and cyclin B antibodies were purchased from Cell Signaling (Danvers, MA). Anti-Caspase 3 antibody was obtained from Genetex (San Antonio, TX). Anti-Bcl-2, Bcl-xL, cyclin E and CDK1 antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Biotinylated Maackia amurensis lectin II was obtained from Vector Laboratories, Inc. (Burlingame, CA). Streptavidin–PE/Cy5 was purchased from Biolegend (San Diego, CA).
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