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7 protocols using e2940

1

Dual Luciferase Assay for NF-κB Activation

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HEK293T cells (2.5 × 105 cells ml−1) were used to seed a 96-well plate. They were transfected, in triplicate, the following day, with WT and mutant RIPK3 plasmids along with 100 ng NF-κB promoter-firefly luciferase reporter plasmid and 100 ng of Renilla luciferase reporter plasmid per well, in the presence of X-tremegen 9 DNA Transfection Reagent (Roche). Luciferase activities were assessed 24 h later, in a dual luciferase assay (Promega, E2940). Firefly luciferase activities were normalized against Renilla luciferase activities.
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2

Cyclin D1 Promoter Luciferase Assay

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Follow our previous method [32 ]. Firstly, construction of reporter gene plasmid. The mouse cyclin D1 promoter sequence was cloned into pGL3-basic plasmid vector to obtain pF1, pF2, pF3, pF4, pF5, and pF6 plasmid. Mutated pF2 was generated by using the Mutant Best Kit (Takara, China). Secondly, transfect cells. At 48 h after pAdEasy-Foxg1 or pAdEasy-Myc transfection, the cells were transfected with the above luciferase reporter expression vectors using Lipofectamine 2000 for the promoter assay, respectively. And then, we used a multi-functional microplate reader to detect the expression level of the reporter gene according to the manufacturer’s instructions (Promega, E2940).
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3

Identifying Regulatory Targets of miR-669a-5p

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The TargetScan (http://targetscan.org) and miRWalk (Home – miRWalk (uni‐heidelberg.de) were used to identify the putative target genes of miR‐669a‐5p. The sequence of mouse G3BP1 (NM_013716; ENSMUSG00000018583.5) and G3BP2 (NM_001080794; ENSMUSG00000029405.16) were obtained from the GenBank and UCSC Genome Browser. Information on miR‐669a‐5p (MI0004523) was acquired from miRBase.
To construct the luciferase reporters, a part of G3BP1 CDS or 3′UTR and G3BP2 3′UTR containing the miR‐669a‐5p potential target sites was cloned in the pmirGLO Dual‐Luciferase Vector (E1330, Promega). The Mut Express II Fast Mutagenesis Kit V2 (C214‐01, Vazyme) was used for target sequence mutagenesis. The primers for constructing plasmids were listed in Table S5 (Supporting Information). Briefly, cells were co‐transfected with the dual‐luciferase plasmid containing G3BP1 CDS or 3′UTR, G3BP2 3′UTR, or the respective mutated sequences, miR‐669a‐5p mimic (MIC669a), or nontargeting NC (NCMIC) oligos and were them cultured for 48 h before the luciferase assay. Firefly and Renilla luciferase activities were detected with a dual‐luciferase reporter assay system (E2940, Promega), and the results were shown as firefly luciferase activity relative to Renilla luciferase activity.
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4

Luciferase Reporter Assay Protocol

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The luciferase reporter assay was performed as previously described (Cao et al., 2014 (link)). Briefly, HEK293T or Huh7 cells were co-transfected with the indicated plasmids. The activity of firefly luciferase was measured at 48 h post transfection (hpt) with a luciferase reporter assay system (E2940; Promega). All the reporter assays were repeated at least three times.
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5

Dual Luciferase Assay for NF-κB Activation

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HEK293T cells (2.5 × 105 cells ml−1) were used to seed a 96-well plate. They were transfected, in triplicate, the following day, with WT and mutant RIPK3 plasmids along with 100 ng NF-κB promoter-firefly luciferase reporter plasmid and 100 ng of Renilla luciferase reporter plasmid per well, in the presence of X-tremegen 9 DNA Transfection Reagent (Roche). Luciferase activities were assessed 24 h later, in a dual luciferase assay (Promega, E2940). Firefly luciferase activities were normalized against Renilla luciferase activities.
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6

PVRL4 Promoter Activity Assay

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Primers containing XhoI and HindIII sites were used to amplify PVRL4 promoter which is located 2000 bases upstream of the 5’UTR. Then the amplified product was cloned into the luciferase reporter vector pGL4.0 (Addgene, 84,924) which was linearized by XhoI and HindIII. And pGL4.0-PVRL4 promoter and Renilla luciferase plasmid were co-transfected into HEK293T cells using Lipfectamine 3000 (Invitrogen, L3000075). After 24 h transfection, the cells were stimulated by IFN-α (1000U/mL). After 24 h, firefly luciferase and Renilla luciferase activities were detected using a dual luciferase reporter system (Promega, E2940). The ratio of firefly luciferase activity to Renilla luciferase activity was calculated.
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7

Luciferase Reporter Assay for Transcriptional Regulation

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DNA X-Treme Gene 9 (#6365779001, Sigma Aldrich) was used to transiently transfect HEK293T cells (4 × 104; 48 well) with specified expression vectors, empty vector controls, promoter firefly luciferase reporter vector and renilla luciferase reporter vector Luminiscence for luciferase expression was measured after 48 h of transfection by luciferase reporter assay system (#E2940, Dual-Glo Luciferase Assay System, Promega). Briefly, 293T cells were transfected with 150 ng of the reporter vector as indicated (Il23r, Il17a, Il17CNS.5, Il9 and Irf4) coding for firefly luciferase (pGL3basic; Promega) under the control of Il9 promoter and with 150 ng of expression vectors as mentioned in the manuscript. Cells were cultured for 48 h before lysing. Firefly luciferase activity was normalized with renilla luciferase activity and the result was represented as RLU. Following constructs were used in the luciferase assay: Il9 promoter luciferase, HA FOXO, pCDNA EGFP, pCDNA IRF4, FOXO ADA and MF D256 (Domenico Accili; Addgene 12145).
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