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8 protocols using 12 well transwell

1

Transwell Permeability Assay for Compounds

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Commercially-available 12-well Transwells (Corning, Corning, NY, USA), with polyester membranes, were utilized to assess static compound permeability in the absence of flow-induced shear stress. The area of each Transwell membrane was 1.12 cm2 with 0.4 µm diameter pores and 0.5% porosity. Epithelial cells were seeded in the Transwell top apical compartment at a density of 2 × 106 cells/mL. Once the cell monolayer had reached confluency, the 500 µL culture media in the top compartment was replaced with a solution of endothelial cell media mixed with various fluorescently-labeled compounds at a pre-determined initial concentration. The bottom basolateral compartment was filled with 1500 µL fresh endothelial cell culture media, and the Transwell was placed in an incubator for 2 h. Then, liquid samples of 100 µL from both compartments were aliquoted into a 96-well plate. Fluorescent intensities of the collected samples were measured, using a BioTek Synergy 2 Plate Reader (BioTek, Winooski, VT, USA), and converted to molecular concentrations as reported elsewhere [21 (link)].
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2

Secretome Analysis of Chondrocyte-Synoviocyte Co-culture

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Isolated AC and SF were plated into 12-well transwells (Corning): AC were seeded into 12-well plates (2 × 105 AC per well) and SF into 12-well inserts (4 × 104 SF per insert). When 80% confluence was reached, the inserts with adherent SF were placed onto the corresponding 12-well plates with AC and incubated in a serum-free medium with or without 10 nM 45 kDa Fn-fs (Merck) in the presence or absence of 10 nM VIP (Bachem) for 48 h. Secretomes were collected from the cultures and selected proteins were measured, using commercial ELISA kits for CHI3L1, C1r, DCN (Merck), and CTSB (Vitro S.A., Madrid, Spain), and a 3-Plex Multiplex for human MMP-2, PTX-3 and C3 (Merck), following manufacturer’s instructions (Figure 8b). AC and SF were also plated separately into 12-well plates and inserts, respectively, for comparisons between the secretome of each cell type and the co-culture under basal conditions (Figure 8a). In parallel, isolated cultures of SF and AC were also performed in 12-well plates (2 × 105 cells per well) with the same treatments described above, for analysis by ELISA and Multiplex (Figure 8c).
A schematic representation of the whole experimental design is shown in Figure 9.
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3

Isolation and Differentiation of Human Fetal Retinal Pigment Epithelium

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Primary human fetal RPE (fRPE) lines were isolated from fetal eyes (Advanced Biosciences Resources, Inc., Alameda, CA) by collecting and freezing non-adherent cells cultured in low calcium medium as described22 (link). When needed, fRPE cells were thawed and plated onto 6-well plates in medium as described23 (link) with 15% FBS. The next day, medium was changed to 5% FBS and the cells were allowed to recover for two additional days. Cells were then trypsinized in 0.25% Trypsin-EDTA (Life Technologies Corporation), resuspended in medium with 15% FBS and plated onto human extracellular matrix-coated (BD Biosciences) Corning 12-well transwells (Corning Inc., Corning, NY) at 240 K cells per transwell. The next day medium was changed to 5% FBS. Cells were cultured for at least 10 weeks to become differentiated (transepithelial resistance of >200 Ω * cm2) and highly pigmented. Medium with 5% FBS was changed every 2–3 days. For the galactose and glucose specific culture conditions, differentiated fRPE cells were cultured for 24 h prior to RNA isolation in DMEM medium (Sigma) with 1 mM sodium pyruvate (Sigma), 4 mM l-glutamine (Life Technologies Corporation), 1% Penicillin-Streptomycin (Life Technologies Corporation), and either 10 mM d-(+)-glucose (Sigma) or 10 mM d-(+)-galactose (Sigma)28 (link). The fRPE lines studied here are not available for distribution.
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4

Differentiation of Primary Human Fetal RPE

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Primary human fetal RPE (hfRPE) cells (Advanced Bioscience Resources, Inc., Alameda, CA) were isolated according to Maminishkis and Miller’s methods [8 (link)] and plated onto human extracellular matrix-coated Corning 12-well Transwells (#3460, Corning Inc., Corning, NY) in medium (#M4526, MilliporeSigma, St. Louis, MO) with 5% heat inactivated fetal bovine serum (FBS; #100–106, Gemini Bio-products, West Sacramento, CA), 1% GlutaMAX (#35050061, Life Technologies Corporation, Carlsbad, CA), 1% N1 Supplement (#N6530, MilliporeSigma), 1% Non-essential Amino Acid Solution (#M7145, MilliporeSigma), 1% Antibiotic-Antimycotic (#15240062, Life Technologies Corporation), 250 µg/ml Taurine (#T0625, MilliporeSigma), 20 ng/ml Hydrocortisone (#H0396, MilliporeSigma), and 13 pg/ml Triiodothyronine (#T5516, MilliporeSigma) [7 (link)]. Cells were allowed to differentiate for at least 5 months before the experiments were begun.
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5

Inhibition of Cancer Cell Migration

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B16F10 cells (CRL-6475, ATCC) and LLC cells (CRL-1642, ATCC) were cultured in Dulbecco’s modified Eagle’s medium high glucose (GIBCO, Thermo Fisher Scientific, MA, USA) supplemented with 10% fetal bovine serum (FBS). Cells were pre-treated with 10 μM AA or/and 100 μM NG before they were stimulated with 5 ng/mL recombinant TGF-β1 (R&D Systems, MN, USA).
Wound-healing assay was performed when cell density reached about 80% confluence. Scratches were made with pipette tips and then cultured for another 24 h. The width of the wound was measured at 0, 6, 12, and 24 h after making the scratches and analyzed with ImageJ software (National Institutes of Health).
To perform migration assay, we starved LLC cells for 24 h before seeding them with serum-free medium in the 12-well transwell with 8.0 μm pore size (Corning, NY, USA). The transwell inserts were placed in receiver wells with medium containing 10% FBS and cultured for another 24 h. Non-migrated cells left in the transwell were swabbed before fixation and Giemsa staining. Then, the transwell membrane was cut and mounted for counting the migrated cells.
250 LLC cells were seeded in a 6-well plate and treated with AA or/and NG for colony-formation assay. When visible colonies appeared, cells were fixed with methanol for 10 min, followed by Giemsa staining. The number of colonies were then counted.
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6

Co-culture Model of HaCaT and THP-1 Cells

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HaCaT cells were cultured in DMEM with 10% FBS at 5% CO2 and 37°C. RPMI-1640 medium is used for culture of Human THP-1 promonocytic cells. Each cell was seeded and, when it reached 80% confluence, was replaced with serum-free media for starvation. After 1 h of treatment with SFEN, heat-killed C. acnes (multiplicity of infection [MOI] = 100) was added to the medium. In co-culture experiments, 1.0 × 105 cells/well of HaCaT cells were seeded in the upper chamber of a 12-well Transwell (Corning Inc., USA). THP-1 cells were seeded in the lower chamber at 2.0 × 105 cells/well. Then, following treatment with SFEN (5, 10, and 20 mM), heat-killed C. acnes (MOI = 100) was treated 1 h later.
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7

In Vivo and Ex Vivo Metastasis Assays

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Migration assays were performed using 12-wellTranswell (Corning, USA) with 105 cells in DMEM on the upper chamber and DMEM/10% FBS in the lower chamber. 16 hrs after seeding, cells in the upper chamber were fixed, stained with DAPI, and photographed. Ex vivo metastasis assay was performed according to a published protocol.20 (link) Briefly, 2×105 cells were IV injected into the FVB/N mouse via tail vein. The mice were euthanized by CO2 inhalation within 15 minutes of tumor cell injection. Mouse lungs were exposed, infused with well-mixed culture medium/agarose solution, then removed and placed in a cold solution of PBS to solidify the agarose/medium solution. Transverse sections were made from each lobe using a #21 scalpel blade, were placed on a single sterile Gelfoam (Pfizer-Pharmacia & Upjohn Co.) section in a 6-cm tissue culture dish with culture medium. Lung sections were incubated at 37°C in humidified conditions of 5% CO2. Fresh culture medium was replaced and lung tissue sections were turned over with a sterile iris thumb forceps every other day. GFP+ tumor cells were photographed using a Zeiss Stemi SV 11 Stereo-Microscope equipped with Kramer Scientific Quad-Fluorescence illumination and counted without prior knowledge of the genotype of the cell. All animal studies were approved by the Animal Care and Use Committee of UT Southwestern.
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8

Cytokine Profiling in PBMC-Caco2 Co-Culture

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The co-culture system based on a 12-well transwell (Corning, USA) was utilized for dose-and timeresponse assays. PBMCs (2x10 5 cells/well) were cultured in the apical compartment, while CaCO-2 cells (2x10 6 cells/well) were cultured in the basolateral compartment. All the assays were performed after treating PBMCs or CaCO-2 cells with LPS (100 ng/ml) for 2 h. For the dose-response assay, the apical compartment was supplemented with medium alone (control group) or medium containing gradient concentrations of MIMP (0.001, 0.01, 0.1, 1, 10, 100, 1000, 10000 ng/ml) for 48 h. For the time-response assay, the CaCO-2 cells were supplemented with medium containing 1 ng/ml MIMP for 3, 6, 9, 12, 24 and 48 h. For the subsequent detection of inflammatory cytokines, the supernatants of both the apical and basolateral compartments were collected and centrifuged to remove cells at 400 g for 10 min.
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