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Thermo fisher mass spectrometer

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Thermo Fisher mass spectrometer is an analytical instrument used to identify and quantify chemical compounds by measuring the mass-to-charge ratio of ions. It functions by ionizing samples and sorting the ions based on their mass-to-charge ratio, providing detailed information about the molecular composition of the sample.

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5 protocols using thermo fisher mass spectrometer

1

CPTAC Lung Tissue Proteogenomics

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The National Cancer Institute’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) is a national effort to accelerate the understanding of the molecular basis of cancer through the application of large-scale proteome and genome analysis.48 (link) Fragments Per Kilobase per Million mapped reads (FPKM) values from lung tissue RNA sequencing data were logarithmically transformed. The Tandem Mass Tag (TMT) labeled global proteome was analyzed using ThermoFisher mass spectrometer (Thermo Scientific).49 (link) After filtering, 195 pairs of genes expression and 200 pairs of proteins abundance of participants’ tumor and adjacent normal tissues were analyzed.
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2

GC-MS Analysis of Chiral Compounds

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The analysis methods were performed according to Sun et al. [7 (link)]. GC-MS analysis was performed by a Thermo Fisher Trace 1310 gas chromatograph (Thermo Fisher Scientific, Waltham, MA, USA) coupled with a Thermo Fisher mass spectrometer (Thermo Fisher Scientific). Separation was performed with TG-Wax (30 m × 0.25 mm i.d., 0.25 μm, Thermo Fisher Scientific). The oven temperature was initially 40 °C, followed by a 1 min hold; increased to 140 °C at a rate of 2 °C/min, followed by a 1 min hold; and finally increased to 220 °C at a rate of 6 °C/min, followed by a 1 min hold. A Trace GC-MS system was used for chiral GC-MS analysis. The GC system was equipped with a 2,3-dimethyl-6-tert-butyldimethylchlorosilane-β-cyclodextrin capillary column (30 m × 0.25 mm i.d., 0.25 μm) from BGB (Switzerland). The mass detector conditions were as follows: ionization energy, 70 eV; ion source temperature, 250 °C; mass range, m/z 35–300; and solvent delay, 5 min.
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3

GC-MS Analysis of Organic Compounds

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The GC-MS analysis was performed using an ISQ LT-TRACE 1310 (Thermo Fisher Scientific, Waltham, MA, USA) coupled with a Thermo Fisher mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA). GCMS-QP2010 (Shimadzu, Japan) was also used. Separations were performed on a TG-WAX column (30 m × 0.25 mm × 0.25 μm, Thermo Fisher Scientific, Waltham, MA, USA). Helium was used as the carrier gas and delivered to the column at a fixed flow rate of 1.0 mL/min. The GC oven temperature was initially 40 °C, followed by a 1 min hold, ramped at 4 °C/min to 220 °C, and held for 8 min. The mass detector conditions were as follows. EI ionization source, ionization energy, 70 eV, ion source temperature, 250 °C, transfer line, 250 °C, mass range, m/z 35–50 amu, injection volume, 1 μL, injector temperature, 250 °C, the sample was injected in a 1:5 split ratio and the mass range was operated with a solvent delay of 6 min for the samples.
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4

GC-MS Analysis of Chemical Compounds

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GC–MS analysis was performed by a Thermo Fisher Trace 1310 gas chromatograph (Thermo Fisher Scientific, Waltham, MA, USA) coupled with a Thermo Fisher mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA). A TG-WAX column (30 m × 0.25 mm i.d., 0.25 μm, Thermo Fisher Scientific, Waltham, MA, USA) was used for separation, and helium was used as the carrier gas. The separation was carried to the chromatographic column at a fixed flow rate of 1.0 mL/min. The initial temperature was 40 °C for 1 min, which was then increased to 140 °C at a rate of 2 °C/min, followed by a 1 min hold. Finally, it was increased to 220 °C at a rate of 6 °C/min and held for 1 min. Mass detector conditions were as follows: ionization energy, 70 eV; transmission line temperature, 250 °C; ion source temperature, 250 °C; mass range, m/z 45–350; and solvent delay, 5 min.
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5

GC-MS Analysis of Volatile Compounds

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GC–MS was performed using a Thermo Fisher Trace 1310 gas chromatograph (Thermo Fisher Scientific, Waltham, MA, USA) coupled with a Thermo Fisher mass spectrometer (Thermo Fisher Scientific, Waltham, MA, USA). Isolates were analyzed using TG-Wax MS columns (30 m × 0.25 mm i.d., 0.25 μm, Thermo Fisher Scientific, Waltham, MA, USA). The carrier gas was high-purity helium (99.999%) at a fixed flow rate of 1.0 mL/min into the column. The initial oven temperature was 40 °C for 1 min, which was then increased to 130 °C at a rate of 2 °C/min and held for 1 min, and finally, increased to 220 °C at a rate of 10 °C/min and held for 8 min. The sample was injected in 1 μL at 250 °C in a 1:30 split ratio.The mass detector conditions were as follows: ionization energy, 70 eV; ion source temperature, 250 °C; mass range, m/z 45–500; solvent delay, 5 min.
Volatile flavor compounds were identified by comparing their retention indices and mass spectra with those of reference standards in the NIST 14 mass spectra database. Retention indices were calculated for each volatile compound using the retention times of a homologous series of n-alkanes (C10–C28).
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