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17 protocols using anti p smad1 5

1

Western Blot Analysis of Smad Signaling

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Thirty micrograms of protein per lane were loaded on 12% SDS/PAGE gels and blotted onto PVDF membranes. Membranes were incubated with rabbit polyclonal anti–p-Smad1, 5, 8 (1:1000, Cell Signalling), rabbit polyclonal anti-Smad1, 5, 8 (1:500, Santa Cruz) or mouse monoclonal anti-β-actin (1:5000, Sigma) antibodies, followed by secondary antibodies tagged with HRP (1:50000; GE Healthcare), and bands were visualized using enhanced chemiluminescence and analyzed using ImageJ software. β-actin was used as a loading control.
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2

Proteomic Analysis of BMP9-Treated Endothelial Cells

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ECs were grown to confluence in six-well plates and serum-restricted in EC-SFM with 0.1%
FBS for 22 h, and then treated without or with 0.5 ng/mL BMP9 for 2 h. The cells were then
harvested for 2D-PAGE analysis as described previously.30 (link) Briefly, cells were immediately frozen on dry ice, and then lysed in radio
immunoprecipitation assay buffer (Sigma) containing protease and phosphatase inhibitors
(ThermoFisher Scientific, California, USA) on ice. Total protein lysates (10 µg) were
separated as described previously.30 (link) Membranes were incubated overnight at 4 ℃ with primary antibodies including
anti-glyceraldehyde-3-phosphate dehydrogenase (TransGen Biotech), anti-Id1 (BioCheck,
Foster City, USA), and anti-p-Smad1/5 (Cell Signaling Technology, Danvers, USA).
Quantification of bands was performed by Quantity one software (Bio-Rad Laboratories,
Inc).
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3

Glioblastoma cell culture protocol

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U251 and U87 human glioblastoma cell lines (ATCC) were cultured in DMEM (Life Technologies) supplemented with 10% fetal bovine serum (Sigma-Aldrich, St. Louis, MO, USA), 100 units/mL penicillin and -100 ug/mL streptomycin (Life Technologies, NY, USA). The cultures were maintained at 37 °C in a humidified atmosphere containing 5% CO2. The patient-derived GSCs used in this study were isolated from GBM patients and were well characterized. The patient-derived GSCs were culture in NS-A medium (90% NeuroCult NS-A Basal Medium Human plus 10% Human NeuroCult NS-A proliferation Supplements, StemCell Technologies). Complete medium was supplied with recombinant human epidermal growth factor (R&D system, Minneapolis, MN, USA), and 100 units/mL penicillin plus 100 ug/mL streptomycin (Life Technologies, NY, USA). For differentiation, GSCs were cultured in NS-A medium supplied with 10% fetal bovine serum. Anti-BIRC3 antibody was obtained from R&D system; anti-b-actin IgG-HRP was obtained from Santa Cruz Biotech; and anti-SMAD1, anti-SMAD5, anti-p-SMAD1/5, Goat anti-Rabbit IgG-HRP and Goat anti-mouse IgG-HRP were obtained from CellSignal.
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4

Antibody panel for cell analysis

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The following antibodies were used in this study: anti-CD11b-FITC (Biolegend, 101206, dilution ratio: 1:100 for flow cytometry and immunofluorescence); anti-Ly-6G-PE (eBioscience, 12-9668-82, dilution ratio: 1:100 for flow cytometry); anti-Ly-6C-PE (Cell eBioscience, 12-5932-82, dilution ratio: 1:100 for flow cytometry); anti-p-Smad1/5 (Cell Signaling Technology, 9516, dilution ratio: 1:100 for immunofluorescence and 1:1000 for Western blot); anti-Smad1/5 (Cell Signaling Technology, 6,944, dilution ratio: 1:100 for immunofluorescence and 1:1000 for Western blot); anti-p-Stat3 (Cell Signaling Technology, 9,145, dilution ratio: 1:1000 for Western blot); anti-Stat3 (Cell Signaling Technology, 9,139, dilution ratio: 1:1000 for Western blot); anti-p-Erk (Cell Signaling Technology, 4,370, dilution ratio: 1:1000 for Western blot); anti-Erk (Cell Signaling Technology, 4,695, dilution ratio: 1:1000 for Western blot); anti-mouse IL6 (Biolegend, 504501, dilution ratio: 1:500 for neutralization); anti-S100A9 (Abcam, GB111149, dilution ratio: 1:2000 for IHC); anti-Ki67 (Servicebio, GB13030-2, dilution ratio: 1:500 for IHC), and anti-β-actin (Sigma, A1978, dilution ratio: 1:1000 for Western blot). Rat tail collagen I (Corning, 356236) and RhBMP2 (R&D, 355-BM-100) were also used. Tris–HCl, NaCl, and other chemicals were from Sigma.
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5

Intestinal Tissue Protein Extraction and Analysis

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Fresh intestinal tissues were washed in 1 mL of ice-cold PBS several times. Tissue and frozen steel beads were placed into a 2 mL centrifuge tube, and tissues were homogenized and lysed in lysis buffer with a protease and phosphatase inhibitor cocktail (Sigma). After clearing by centrifugation, protein concentrations in the supernatant were determined using a spectrophotometer (Thermo Fisher). Proteins were separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes (Immobilon-P, Millipore). Significant results are shown, and similar results were obtained in at least three independent experiments. The primary antibodies were anti-β-catenin (BD Biosciences, lot 610154), anti-active β-catenin (Cell Signaling, lot D13A1), anti-psmad1/5 (Cell Signaling, lot 41D10); and anti-math1 (Santa Cruz, lot sc-136173). Proteins were detected by ECL WB detection regent (Thermo Fisher).
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6

Immunohistochemical Analysis of Scaffold Sections

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Scaffolds were fixed in 10% formalin, paraffin-embedded, and sectioned at 4 µm. Following deparaffinization, the sections were treated with 0.5% Triton X-100 (MP Biomedicals, LLC, Santa Ana, CA), blocked with 10% normal goat serum (Jackson ImmunoResearch Laboratories, Inc, West Grove, PA) for 1 hour, and subjected to heat-induced antigen retrieval using sodium citrate buffer(10 × 10−3m, pH 6, Fisher Scientific International, Inc., Pittsburgh, MA) at >80 °C, for 20 min. Sections were then separately incubated with anti-p-Smad1/5 (1:500, Cell Signaling Technologies), anti-Yap (1:200, Santa Cruz Biotechnology, Santa Cruz, CA), anti-non-p-β-catenin (1:1000 Cell Signaling Technologies, Beverly, MA) overnight in 4 °C. After washing, sections were incubated in anti-rabbit or anti-mouse IgG Alexa Fluor Plus 594 (Thermo Fisher, Eugene, OR). Coverslips were mounted with Prolong Gold Antifade Reagent with Dapi (Cell Signaling Technologies, Danvers, MA). Images were captured with the Zeiss Axio Observer 3 inverted microscope with the ZEN 2.3 Pro software (Zeiss, Oberkochen, Germany) and the Zeis LSM900 confocal laser scanning microscope with Zen 3.1 Blue software (Zeiss, Oberkochen, Germany).
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7

Immunoblot Analysis of Signaling Proteins

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Immunoblot assay was performed as described previously60 (link). Briefly, proteins extracted in lysis buffer were separated by SDS–polyacrylamide gel electrophoresis and electrophoretically transferred onto polyvinylidene difluoride membranes. The membranes were probed with antibodies overnight at 4 °C, and then incubated with a horseradish peroxidase-coupled secondary antibody. Detection was performed using a LumiGLO chemiluminescent substrate system. The following antibodies were used at indicated dilutions: anti-SHP2 (Santa Cruz Biotechnology, sc-7384), anti-SOX9 (Abcam, ab76997), anti-pSmad1/5 (Cell Signaling Technology, 9516), anti-p-Erk1/2 (Cell Signaling Technology, 4370), anti-ACTIN (Abmart, M20010).
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8

Histological Analysis of Scaffold Cultures

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Histologic studies were performed on scaffold cultures at 24 days and 6 weeks. Scaffolds were fixed at 10% normal buffered formalin, embedded in paraffin, and sectioned at 4 microns using standard techniques. The sections were deparaffinized and stained with hematoxylin and eosin, Alizarin Red, or anti-p-Smad1/5 (Cell Signaling Technologies, Beverly, MA) and processed with the Dako automated FLEX system (Dako, Carpinteria, CA). All slides were analyzed qualitatively using a standard microscope and digitally photographed at 20× magnification.
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9

Protein Expression Analysis of Bone Signaling

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Total protein was extracted with a whole cell lysis, and its concentration was measured using a BCA protein assay kit (Thermo Fisher Scientific; No. 23225). Proteins were separated on 10%‐12% SDS‐polyacrylamide gel electrophoresis and transferred to a PVDF membrane (Millipore). The membranes were blocked with 5% bovine serum albumin and then incubated with the following primary antibodies: anti‐Runx2 (Cat No. 125561; Cell Signaling, 1:1000), anti‐GAPDH (Cat No. 5174; Cell Signaling, 1:1000), anti‐P‐Smad1/5 (Cat No. 9516; Cell Signaling, 1:1000), anti‐Smad1 (Cat No. 6944; Cell Signaling, 1:1000), OPN (Cat No. BS1264; Bioworld Technology, 1:1000), anti‐non‐p‐β‐catenin (Cat No. 19807; Cell Signaling, 1:1000), anti‐β‐catenin (Cat No. 8480; Cell Signaling, 1:1000), anti‐BMP2 (ab14933; Abcam, 1:600), anti‐Smad6 (ab13727; Abcam, 1:500), anti‐BMPR‐IA (sc5676; Santa, 1:200), anti‐BMPR‐IB (sc5679; Santa, 1:200) and anti‐BMPR‐II (sc393304; Santa, 1:200). The membranes were incubated with secondary antibodies, after washing 3 times for 10 minutes with TBST. Next, enhanced chemiluminescence reagent (Thermo Fisher Scientific) was used to detect the blots.
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10

Protein Expression of Stem Cell Markers

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The hASCs were rinsed with ice PBS three times and immersed in RIPA buffer (HuaxingBio, Beijing, China) mixed with protease inhibitor cocktail (HuaxingBio). The pierce BCA protein assay kit (Thermo Fisher Scientific) was used to determine the protein concentration. A 25-μg sample of protein was added and separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis, then followed by transfer to the polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). Strips on the membranes were blocked with 5% nonfat dry milk (BioRuler, Danbury, CT, USA) for 1 h at room temperature, incubated overnight at 4 °C with primary antibodies at a dilution of 1:1000, and then for 1 h at room temperature with goat anti-rabbit secondary antibodies labeled with horseradish peroxidase (ZSGB-BIO, Beijing, China; ZB-2301) at a dilution of 1:10,000. The primary antibodies used were as follows: anti-GAPDH (ZSGB-BIO; TA-08), anti-NOTCH1 (Cell Signaling Technology, Beverly, MA, USA; 3608S), anti-HES1(Abcam, Cambridge, UK; ab108937), anti-LSD1 (Cell Signaling Technology; 2139S), anti-BMP2 (Abcam; ab14933), anti-SMAD4 (Abcam; ab40759), anti-phosphorylated SMAD1/5 (anti-p-SMAD1/5; Cell Signaling Technology; 9516S), and anti-RUNX2 (Cell Signaling Technology; 12556). Relative band intensities were measured with the ImageJ software.
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