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13 protocols using sodium hydroxide (naoh)

1

Chitosan-Gallic Acid Antioxidant Protocol

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Chitosan (CAS 9012-76-4) with a molecular weight of ~300 kDa and deacetylation degree of 85% was supplied by Heppe Medical Chitosan GmbH (Halle, Germany). Hydrochloric acid (37% ISO for analysis), sodium hydroxide and 2,2’-diphenyl-1-picrylhydrazyl (DPPH) were purchased from Carlo Erba (Milano, Italy), AppliChem (Darmstatd, Germany), and Merck KGaA (Darmstadt, Germany), respectively. Dibasic sodium phosphate (Na2HPO4), acetic acid (99.8%, Romil Pure Chemistry), 99% D2O for NMR, and FT-IR grade KBr were provided by Merck KGaA. Gallic acid (3,4,5-trihydroxybenzoic acid, 98.0% purity), employed as a bioactive compound, was supplied by Merck KGaA.
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2

Fluorescein-loaded PVA Film Formulation

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Polyvinyl alcohol 18-88 (PVA) was kindly provided by Merck (Darmstadt, Germany). Glycerol as plasticiser was purchased from Caelo (Hilden, Germany). Demineralised water was used as solvent. Fluorescein sodium as model substance was purchased from Sigma-Aldrich Chemie (Darmstadt, Germany). Potassium dihydrogen orthophosphate was obtained from neoFroxx GmbH (Einhausen, Germany), sodium hydroxide was purchased from AppliChem GmbH (Darmstadt, Germany) and honey was obtained from Langnese Honig GmbH & Co. KG (Bargteheide, Germany). PVA strings were purchased from M&R Angelgeräte GmbH (Karlsruhe, Germany).
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3

Casein Micelle Interaction Analysis

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Casein micelles (CSMs, 92% protein) were purchased from VWR Chemicals (Leuven, Belgium). Fluorescein isothiocyanate was obtained from Fluorochem Ltd. (Hadfield, UK). β-mercaptoethanol, sodium hydroxide, and sodium chloride were acquired from AppliChem GmbH (Darmstadt, Germany). Sodium dodecyl sulfate (SDS) and Coomassie blue dye (G250) were acquired from Sigma Aldrich (St. Louis, MO, USA). 8-Anilino-1-naphthalenesulfonic acid (ANS) was purchased from Cayman Chemical Company (Ann Arbor, Michigan, USA). Hydrochloric acid, phosphoric acid, methanol, and ethanol absolute were obtained from Merck (Darmstadt, Germany).
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4

Analytical Reagents for Chemical Analysis

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The following chemicals were used in this research: aceton (Lach-Ner, Neratovice, Czech Republic); acetonitrile (Applichem, Darmstadt, Germany); ammonium formate (GramMol, Zagreb, Croatia); argon, 99.9995% (Messer, Bad Soden am Taunus, Germany), certified element reference material (CPAChem, Bogomilovo, Bulgaria); distilled water and nitric acid (Gram-Mol, Zagreb, Croatia); helium, 6.0 (Messer, Bad Soden am Taunus, Germany); methanol (GramMol, Zagreb, Croatia); mixture of magnesium sulphate, sodium chloride, and citrate salts (Citrate-Kit-01, BEKOlut, Bruchmühlbach-Miesau, Germany); mixture of magnesium sulphate salt, primary secondary amine, and GCB (PSA-Kit-06, BEKOlut, Bruchmühlbach-Miesau, Germany); sodium hydroxide (T.T.T., Sveta Nedjelja, Croatia); petrol ether (Applichem, Chicago, IL, USA); sulfuric acid (Chemistry, Zagreb, Croatia); and hydrogen peroxide (Gram-Mol, Zagreb, Croatia).
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5

Synthesis of Iron Oxide Nanoparticles

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The bare iron oxide nanoparticles employed for this study were synthesised by co-precipitation of Fe2+ and Fe3+ in alkaline aqueous solutions according to our previously optimised procedure66 (link). 21.2 g of FeCl3 × 6 H2O and 8.3 g of FeCl2 × 4 H2O were dissolved in 200 mL of deionised, degassed water resulting in a Fe(III): Fe(II) ratio of 1.9: 1. This iron chloride solution was added to 1 L of 1 M NaOH prepared with deionised, degassed water stirring at 250 rpm in a reaction vessel. The reaction mixture was kept under a nitrogen atmosphere at 25 °C and stirred for an additional 30 minutes before the resulting nanoparticles were washed with deionised water until the conductivity of the MNP solution was below 200 µS cm−1. In order to separate the particles, the mixture was placed on a NdFeB permanent magnet. Suspensions were lyophilised with an ALPHA 1-2LD plus from Martin Christ Gefriertrocknungsanlagen GmbH, Germany in order to obtain solid particles. FeCl3 × 6 H2O and sodium hydroxide were purchased from AppliChem GmbH, Germany in the highest purity available. FeCl2 × 4 H2O extra pure was obtained from Merck KGaA, Germany.
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6

Preparation and Evaluation of PVA Films

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The polymer polyvinyl alcohol EMPROVE® ESSENTIAL PVA 18-88 (Merck KGaA, Darmstadt, Germany) was used to prepare the films. Anhydrous glycerol (AppliChem GmbH, Darmstadt, Germany) served as plasticizer. Demineralized water was used as solvent.
Potassium dihydrogen phosphate (neoFroxx GmbH, Einhausen, Germany), sodium hydroxide (AppliChem GmbH, Darmstadt, Germany) and deionized water were used to prepare the phosphate buffer pH 7.4 USP. Both chemicals were used in analytical grade.
Agar for microbiology (Sigma-Aldrich Chemie GmbH, Steinheim, Germany) and mucin 75–95% for biochemistry (Carl Roth GmbH & Co. KG, Karlsruhe, Germany) as well as demineralized water were used to prepare biomimetic gels.
For testing mucoadhesion on porcine intestine, porcine small intestine was obtained from a local slaughterhouse (female, 12–15 weeks of age, 35–50 kg, n = 3). The small intestine was examined after collection in the unprocessed and processed state. The preparation of the tissue is explained in more detail in Section 2.2.3 Preparation of animal tissue. Furthermore, prepared tissue sections were additionally deep-frozen at −20 °C, thawed for the measurements and subsequently examined.
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7

Quantification of Fluoroquinolone Antibiotics

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High purity (>99%) FLU, OA, OFL, ENR, and CIP were purchased from Sigma-Aldrich. NaOH, H2SO4 (96%), glacial acetic acid, and UHPLC-grade methanol and acetonitrile were provided by AppliChem-Panreac. Ammonium acetate was provided by Scharlau.
Respective (F)Q 250 µM stock solutions were prepared in basic media; all solutions were stable at dark conditions (no hydrolysis was observed).
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8

Spore Cultivation and Activation Conditions

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By inoculation of the preculture in 1500 mL of the same medium in a bioreactor (Biostat A plus, Sartorius AG, Göttingen, DE) cultivation was started at 37 °C and constant oxygen supply of 2 L/min filtered air. The pH was kept constant by automatic addition of 0.5 M NaOH (AppliChem, Darmstadt, DE) or 0.5 M HCl (Sigma Aldrich, Darmstadt, DE) with a control unit (Biostat A plus DCU, Sartorius AG, Göttingen, DE). The pH levels were varied between 7.00 and 9.00 in steps of pH 0.50. After 48 h the fermentation was stopped, microorganisms harvested and washed as described above. All spores were subsequently heat activated at 80 °C for 20 min. The viable amount of spores was examined by serial decimal dilutions in Ringer’s solution (Merck, Darmstadt, DE). 100 µL of the appropriate dilutions were plated on plate count agar (for 1000 mL:5.0 g peptone from caseine (Gerbu, Heidelberg, DE), 2.5 g yeast extract (Sigma Aldrich, Darmstadt, DE), 1.0 g glucose (Merck, Darmstadt, DE), 15 g agar–agar (Fisher Scientific, Schwerte, DE)) and incubated at 30 ° for 24 h.
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9

Functionalization of Magnetic Beads for Targeting

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MB-shell functionalization was done via the EDC (i.e. N-(3-dimethylaminopropyl)-N-ethylcarbodiimide hydrochloride, Sigma Aldrich, Munich, Germany) coupling chemistry. The butyl-ester groups of the PBCA side-chains were partly hydrolyzed by increasing the pH to around 10 with NaOH (0.1 M, AppliChem, Darmstadt, Germany) for 15 minutes. The resulting carboxyl groups were activated by EDC (5 x 108 MB, 7.5 mg EDC) and streptavidin (300 µg, ChemImpex, Wood Dale, USA) or the E-selectin binding peptide IELLQAR (1 mg, Olga Iranzo, Marseille, France) were added to the MB suspension followed by stirring at 4 °C overnight. The functionalized MB were purified by several washing steps to remove the unreacted EDC and peptides and size-separated by centrifugation and flotation. Streptavidin-labeled MB (1 x 107) were further functionalized by coupling to biotinylated antibodies directed against VCAM-1 (5 µg, clone 429, eBioscience, Frankfurt, Germany) and VEGFR-2 (0.75 µg, Abcam, Cambridge, UK).
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10

Analytical Method for Antimicrobial Compounds

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Thiabendazole (TBZ), flumequine (FLU), oxolinic acid (OA), ofloxacin (OFL), enrofloxacin (ENR) and ciprofloxacin (CIP) (molecular structures shown in Fig. 1) high purity (>99 %), gum Arabic, lignin sulphonic acid sodium, peptone, and humic acid substances were purchased from Sigma-Aldrich. Beef extract from Bovril. FeSO 4 •7H 2 O, H 2 O 2 (33 % w/v), NaHCO 3 , NaCl, (NH 4 ) 2 SO 4 , NaOH, acetic acid (96 %), 1,10-phenanthroline 1-hydrate, H 2 SO 4 (96 %), and UHPLC grade methanol and acetonitrile, were obtained from AppliChem-Panreac. Ammonium acetate, K 2 HPO 4 , MgSO 4 •7H 2 O, CaSO 4 •2H 2 O and ascorbic acid were purchased from Scharlau, and formic acid (80 %) from VWR Chemicals. Ultra-pure water (MQ) was prepared with a Merck Milli-Q system. FLU, OA, OFL, ENR and CIP 300 μM stock solutions were prepared in basic media and TBZ 300 μM in acidic media. All the solutions were stable when preserved in the dark, and no hydrolysis was observed.
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