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9 protocols using opti mem

1

Plasmid Transfection and TTM Treatment

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Plasmid preparation was performed and as previously described with some modifications [71 (link), 72 ]. MCF-7 cells and K562 cells were washed twice with Opti-MEM (Life Technologies, Grand Island, NY). Cells were then transfected with plasmid using Opti-MEM containing 10 μg plasmids in 100 μL of Opti-MEM and Super Electroporator NEPA21 system (NEPAGENE, Japan). After that cells were plated on 6-well plates at a density of 1 × 106 cells cells per well. Twenty-four hours after transfection, cells were treated with 30 μM TTM for 48 hr prior to harvesting.
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2

Efficient Transfection of Mammary Epithelial Cells

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A total of 1 × 106 cells of the sorted MaSC-enriched fraction from about eight mice were suspended and washed in Opti-MEM (Life Technologies, Carlsbad, CA, USA) twice. Then, 10 μg of donor and helper vector DNA were mixed at a ratio of 3:1 with the MECs in Opti-MEM, and subjected to electroporation using NEPA21 (NEPAGENE, Chiba, Tokyo) with a 2-mm gap electrode cuvette (NEPAGENE, EC-002S). The settings for this electroporation are shown in Additional file 1 (Table S1). After electroporation, the cell suspension was immediately suspended in culture medium.
For transfection into NMuMG, dissociated cells were plated on six-well plates at 20–30% confluence a day before transfection. Donor and helper vectors were introduced at an OD260 ratio of 3:1 by pouring the mixture of 4 μg of DNA and 8–12 μg of polyethylenimine (Polysciences, Warrington, PA) into 200 μL of Opti-MEM.
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3

SQOR Knockdown in THP-1 Cells

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Knockdown of SQOR was accomplished by electroporation of small interfering RNA (siRNA) oligos. The siRNA oligos were purchased from Horizon Discovery and included the following: ON-TARGETplus Non-targeting Control Pool (D-001210-02) and ON-TARGETplus Human SQOR siRNA (J-008271-10 and J-008271-12). The siRNA oligos (3 μM) were electroporated into 4x106 THP-1 cells in 100 μL Opti-MEM (275 V, 1.5 ms, NEPA21, Nepa Gene Co., Ltd., Japan). Analyses were performed 72 h after electroporation. In some experiments, a second electroporation was conducted after 24 h, and cells were then cultured for 48 h.
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4

Efficient CRISPR/Cas9 Genome Editing in Mice

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Cas9 protein, crRNAs and tracrRNAs were purchased from Integrated DNA Technologies (Coralville, IA, USA). Two crRNAs were designed to target the Hr gene in eight inbred strains (5′-CTAACACTTGGCATGACCAA-3′ and 5′-GATGGAAGCCCCTGGCTAGA-3′). The RNP complex was prepared in Opti-MEM (Thermo Fisher Scientific, Waltham, MA, USA) with 2.4 μM Cas9 protein, 3.7 μM crRNA and 7.4 μM tracrRNA at 25°C for 5 min. RNP solutions were prepared immediately before electroporation and kept on ice until use.
Electroporation was performed using the TAKE method (Kaneko, 2017 (link)) with a NEPA21 Super Electroporator (NEPA GENE Co. Ltd, Chiba, Japan). The poring pulse was set to a voltage of 40 V, pulse length of 3.0 ms, pulse interval of 50 ms, number of four pulses, decay rate of 10% and + polarity. The transfer pulse was set to a voltage of 10 V, pulse length of 50 ms, pulse interval of 50 ms, number of five pulses, decay rate of 40% and +/− polarity. A 1-mm gap electrode (CUY501P1-1.5, NEPA GENE) was filled with 5 μl RNP solution, and zygotes washed with Opti-MEM solution were arranged on the electrode. Electroporated zygotes were observed for survival and cultured in KSOM overnight at 37°C and 5% CO2.
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5

Improved Zygote Electroporation Protocol

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We applied electroporation with repeated pulses to first pore the zona pellucida and then transfered RNPs intracellularly by NEPA 21 electroporator (NEPA GENE Co. Ltd., Chiba, Japan). A glass chamber with 8 mm gap platinum plate electrodes (NEPA GENE Co. Ltd, CUY505P5,) was filled with 50 μl of RNPs in Opti-MEM. The impedance was adjusted to 0.5 kΩ. Between 50 and 80 zygotes were aligned in the center line of the chamber, avoiding contacts between zygotes. Electroporation program was set to 225 V, 2 msec pulse length, 50 msec pulse interval, 4 rounds of pulses, 10% decay rate and + polarity for the poring pulse and 20V, 50 msec pulse length, 50 msec pulse interval, 5 rounds of pulses, 40% decay rate and ± polarity for the transfer pulse. After the electroporation, embryos were washed and transferred in EmbryoMax Advanced KSOM Embryo Media (Millipore Sigma, MR-101-D).
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6

Transgenesis in Common Marmoset Embryos

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The plasmids and mRNA transposases for transgenesis were dissolved in OPTI-MEM (Thermo Fisher Scientific, Inc.). The embryos were transferred to M2 medium containing 0.1 M sucrose (Nacalai Tesque). The plasmids and mRNA were injected into the perivitelline space of embryos using an injection pipette with a spike (TPC, Målov, Denmark), followed by electroporation of the embryos in OPTI-MEM (S2 Table) using a Super Electroporator NEPA21 Type II (NEPA GENE, Chiba, Japan) and platinum plate electrodes on a glass slide (1 mm gap, L 15 mm× W 1 mm × H 1.5 mm). The embryos were incubated in M2 medium for 10 min at room temperature. For common marmosets, embryos were cultured in sequential blast medium for 7–14 days. After cultivation, the embryos were used for subsequent experiments.
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7

CRISPR-Based Genetic Modification of Embryos

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MII oocytes were collected as described above. The RNP complex was co-injected with sperm during ICSI38 (link). MII oocytes and sperm were washed in a drop of 200 ng/µl RNP complex in opti-MEM (Invitrogen), and ICSI was performed in the drop. Electroporation of the RNP complex into ICSI embryos was performed using a Super Electroporator NEPA21 (Nepa Gene). In brief, 10 min after ICSI, zygotes were placed in the glass chamber between 1-mm-gap platinum electrodes (Nepa Gene); this chamber was filled with 6 µl of opti-MEM containing 200 ng/µl RNP complex39 (link). The poring pulse parameters were as follows: voltage, 40 V; pulse width, 3.5 ms; pulse interval, 50 ms; and number of pulses, +4. The transfer pulse parameters were as follows: voltage, 5 V; pulse width, 50 ms; pulse interval, 50 ms; and number of pulses, ±5.
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8

Electroporation of Cultured SSCs

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The four-day cultured SSCs were harvested and washed twice by centrifugation at 600g for 7 minutes at 4°C. The cells were counted and re-suspended in ice-cold OPTI-MEM (Gibco™ Grand Island, New York, USA) buffer without serum or antibiotic at a concentration of 1×10^6 cells/in 98μL. A 5µg/ul concentration of enhanced green fluorescent plasmid (eGFP-N1, Clontech, Japan) was added into the tube with cells and mixed gently. The OPTI-MEM buffer with cells was pipetted into 0.4mm gap electroporation cuvettes (Nepa Gene, Japan). The cuvettes were placed into the shocking chamber of the electroporator and, and the parameters were set. After the burst, the cells were placed in a pre-warmed culture medium and incubated at 37°C, 5% CO2 for 48 hours.
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9

Inactivation of B2M in Cynomolgus iPSCs

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The wild-type cyiPSC line 1123C1 was previously described.20 (link) cyiPSCs were maintained in AK-02N medium (Ajinomoto).
CRISPR-Cas9 constructs were designed based on a previous report.21 (link) To inactivate B2M, we aimed at disrupting exon 2 of the cynomolgus monkey B2M gene. The guide RNA sequence was UAUGUUCCUCAGGUACUCCA, which corresponds to the sequence at the 5′-end of exon 2 (Fig. 1A). The guide oligo DNAs (Table 1) corresponding to the guide RNA sequence were annealed and ligated to pSpCas9(BB)-2A-Puro.21 (link)BbsI was then used to digest pSpCas9(BB)-2A-Puro. DNA vectors (3.3 μg) encoding the guide RNA for B2M and Cas9 were introduced into 1.0 × 106 cyiPSCs in 100 μL OPTI-MEM by a nucleofection system following the manufacturer's instructions (Nepa21, Nepa Gene). Electric pulses (175 V, 5 ms) were used. Two days after the nucleofection, the cells were cultured with puromycin. Eight days after the nucleofection, 39 colonies were picked up, and the cells in each colony were expanded. Genomic DNAs were extracted from the cells and subjected to polymerase chain reaction (PCR) analysis.
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