The largest database of trusted experimental protocols

22 protocols using α sma

1

Immunofluorescence Analysis of Lung Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The section (5 µm) from lung tissues were washed with PBS and separately co-incubated with HSP110 (Affinity) and YAP (Proteintech), HSP110 (Affinity) and alpha smooth muscle actin (α-SMA) (Affinity), YAP (Proteintech) and α-SMA (Abclonal), proliferating cell nuclear antigen (PCNA) (Abclonal) and α-SMA (Affinity), and Beclin1 (Abclonal) and α-SMA (Affinity) antibodies overnight at 4 °C. After washing, the sections were subject to second antibodies Cy3-labeled goat anti-rabbit IgG (Beyotime; Invitrogen, USA) and FITC-labeled goat anti-mouse IgG or anti-rabbit IgG (Beyotime; Abcam, UK) incubation at room temperature for 1.5 h. For cell immunofluorescence staining, fixed glass coverslips with cells were incubated with primary antibodies α-SMA (Affinity), Beclin1 (Abclonal) and YAP (Proteintech) overnight at 4 °C. Then the cells were subsequently incubated with fluorescent secondary antibodies Cy3-labeled goat anti-mouse IgG or anti-rabbit IgG (Beyotime) at room temperature for 1 h. The sections and coverslips then were incubated with DAPI (Aladdin, China) for counterstain and pictures were taken with fluorescence microscope (Olympus).
+ Open protocol
+ Expand
2

Histochemical Analysis of Liver Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The liver tissue was immediately fixed in a 10% formaldehyde solution and gradient ethanol for dehydration treatment, then embedded in paraffin to make 5 μm thick tissue sections. Before pathological staining, the slices were placed in an oven at 60 ℃ for 2 h, then dewaxed with xylene and rehydrated with gradient ethanol. Tissue sections were then stained with H&E, Sirius Red (Cat.MM1004, MaoKang biotechnology Co., Ltd, Shanghai, China), Masson (Solarbio, Peking, China), and were performed to observe the structural changes and collagen fiber deposition of the liver tissues in each group by an optical microscope.
For immunohistochemical staining, the tissue sections were dewaxed and rehydrated with gradient ethanol. After antigen repair with hydrogen peroxide and sodium citrate, the tissue sections were sealed with 5% BSA at room temperature for 1 h. Tissue sections were incubated overnight at 4 ℃ with the following primary antibodies from Affinity Biosciences (Cincinnati, OH, USA): α-SMA (Cat. AF1032), Collagen I (Cat. AF7001) at a dilution of 1:200. After washing 3 times by PBS, the anti-rabbit IgG (Cat. ZB-2301, Zhongshan-golden bridge, China) secondary antibodies was incubated at 37 ℃ for 1 h. DAB color solution was added for color development, and the nuclei were stained with hematoxylin. Tissue sections were observed with light microscopy and photographed.
+ Open protocol
+ Expand
3

Molecular Mechanisms of Cellular Fibrosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
PTL (> 99%) was provided by Shangdeyaoyuan Co. (Tianjin, China). DEX sodium phosphate (> 98.5%) was purchased from Meilun Biological Technology Co. (Dalian, China), and BLM sulfate (> 91%) was obtained from Meilun Biological Technology Co. (Dalian, China). The NF-κB, Snail, β-actin, GAPDH, E-cadherin, vimentin, MMP1, α-SMA and Col-1 antibodies were purchased from Affinity Biosciences Co. (Beijing, China). The mouse TNF-α, mouse IL-4, mouse TGF-β1, and mouse interferon gamma ELISA Kits were purchased from Meilian Biological Technology Co. (Shanghai, China). Chlorine ammonia T (> 97.08%) and p-dimethylaminobenzaldehyde (> 97.08%) were obtained from (> 99.71%). Reverse-4-hydroxy-l-proline (> 99.4%) was purchased from Bailingwei Technology Co. (Beijing, China). Perchloric acid (> 70%) was obtained from Jingchun Biological Technology Co. (Shanghai, China).
+ Open protocol
+ Expand
4

Idelalisib Modulates LX2 and LO2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Idelalisib (with a purity of >95%) was purchased from Meilun Biotechnology Co., Ltd. Masson stain, DMEM medium, and PBS buffer powder packs were purchased from Solibol. Apoptosis Assay Kit, Luciferase Assay Kit, and BCA Assay Kit were purchased from Beyotime. Associated antibody, GAPDH, caspase‐9, and cleaved caspase‐9 were purchased from Proteintech Group, Inc. α‐SMA, COL1, PARP, Tublin, P‐PI3K, and PI3K were purchased from Affinity Biosciences. P‐Smad3, Smad3, cleaved caspase‐3, caspase‐3, p‐Akt, and Akt were purchased from Cell Signaling Technology. LX2 cells and LO2 cells were purchased from the ATCC cell bank. Luciferase plasmids, miRNA mimics, and miRNA inhibitors were purchased from Riebok Biotech, Inc.
+ Open protocol
+ Expand
5

CCl4-Induced Liver Injury Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
CCl4 was purchased from Bodi Chemical Co., Ltd., (Tianjin, China). Olive oil was purchased from Beijing Solarbio Science and Technology Co., Ltd., (Beijing, China). Colchicine and pentobarbital sodium were obtained from Wuhan Servicebio Technology Co., Ltd., (Wuhan, China). Assay kits for aspartate aminotransferase (AST), alanine aminotransferase (ALT), interleukin 6 (IL6), tumor necrosis factor α (TNF-α) kits, hyaluronic acid (HA) and laminin (LN) were purchased from Shanghai Enzyme Research Biotechnology Co., Ltd., (Shanghai, China). Kits for superoxide dismutase (SOD), glutathione peroxidase (GSH-Px) and malondialdehyde (MDA) were purchased from Nanjing Jiancheng Biological Engineering Research Institute (Nanjing, China). The TUNEL Apoptosis Assay Kit was purchased from Thermo Fisher Scientific (Waltham, MA, USA). BCA Protein Assay Kit was purchased from Abcam (Cambridge, MA, USA). The chemiluminescent substrate (ECL kit) was purchased from Affinity (Jiangshu, China). Antibodies against P-PI3K, P-Akt, HSP90, MYC, p53, α-SMA, collagen I and β-actin were from Affinity (Jiangshu, China). Secondary antibodies were from Affinity (Jiangshu, China).
+ Open protocol
+ Expand
6

Western Blotting Protocol for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RIPA buffer (Beyotime Bio., Shanghai, China) was used to prepare cell extracts for immunoblotting. Afterwards, total protein content was determined using a Bio-Rad protein assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Protein samples were electroblotted onto polyvinylidene difluoride (PVDF) membranes. TBST (Tris-buffered saline containing Tween 20) buffer with 5% bovine serum albumin was used to block the membranes. The membranes were blocked at room temperature for 1 h, and then, the corresponding primary antibodies, α-SMA (Affinity Biosciences, Cincinnati, OH, USA; AF1032; 1 : 500), COL1A1 (Affinity Biosciences; AF7001; 1 : 500), TGF-β (Abcam, Cambridge, MA, USA; Ab179695; 1 : 3000), FGFR4 (Affinity Biosciences; DF10316; 1 : 1000), and GAPDH (Cell Signaling Technology, Danvers, MA, USA; #5174; 1 : 2000), in TBST buffer were used to incubate the membranes. The membranes were kept at 4°C overnight. On the next day, the membranes were incubated with secondary antibodies (Beyotime) at room temperature for 1 h. An enhanced chemiluminescence chromogenic substrate (Thermo Fisher Scientific) was used for visualized protein bands.
+ Open protocol
+ Expand
7

Protein Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein was extracted from fresh tissues and mRTECs by using RIPA lysate. The total protein concentration was measured using a BCA protein quantitative kit and denatured by heating. The protein samples were assessed by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), semi-dry transferred to polyvinylidene fluoride (PVDF), and incubated with primary antibody against α-SMA (1:350, Affinity, USA) and Col1α1 (1:500, Abcam, USA) at 4°C overnight. Next, after being washed by TBST three times and incubated with a specific secondary antibody (1:3,000; Boster, China) for 2 h at room temperature. Immunoreactivity was visualized using an ECL detection system.
+ Open protocol
+ Expand
8

Comprehensive Western Blot Methodology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blot was performed as previously described20 (link). Antibodies used in this study were PDLIM1 (Affinity, DF3003), α-SMA (Affinity, AF1032), COL1A1 (Cell Signaling Technology, #91144), CTCF (Millipore, 07-729), TNF-α (Affinity, AF7014), IL-6 (Affinity, DF6087), p65(Affinity, AF5006), anti-p-Smad2/3 (Abcam, ab254407), anti-Smad2/3 (Abcam, ab202445), anti-p-ERK (Abcam, ab201015), anti-ERK (Abcam, ab184699), anti-p-P38 (Proteintech, 28796-1-AP), anti-P38 (Proteintech, 66234-1-Ig), anti-p-JNK (Proteintech, 80024-1-RR), anti-JNK (Proteintech, 66210-1-Ig), GAPDH (Cell Signaling Technology, #2118). Western blot analysis was performed on at least three independent biological replicates.
+ Open protocol
+ Expand
9

Protein Purification and Cell Culture Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
IPTG was purchased from Gibco (Gand Island, NY, USA). Ni-agarose affinity chromatography columns were purchased from Invitrogen (Cambridge, UK). Bleomycin hydrochloride (BLM) was purchased from Maclean (Shanghai, China). DMEM was supplied by Gibco (Gand Island, NY, USA); Fetal bovine serum was purchased from PAN-Biotech (Heilbronn, Germany); Recombinant human TGF-β1 was purchased from PEPROTECH (Rocky Hill, USA); GAPDH, α-SMA and FN antibodies were purchased from Affinity (Cincinnati, OH, USA); Col-I ELISA kit was purchased from MEIMIAN (Jiangsu, China); Hydroxyproline kit was purchased from Nanjing Jiancheng (Nanjing, China).
+ Open protocol
+ Expand
10

Quantifying Protein Expression in Liver Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from LX-2 cells, mouse, and human liver tissues by lysing in RIPA buffer (Millipore, Billerica, MA, USA) supplemented with protease inhibitors (1% phenylmethanesulfonyl fluoride (PMSF)). The protein concentration was quantified by the BCA protein assay kit (Beyotime, Nanjing, China) using BSA as standard. Total protein was separated by loading on 6%-10% Trisglycine SDS-PAGE and then transferred onto polyvinylidene fluoride (PVDF) membranes (Millipore, Darmstadt, Germany). Primary antibodies incubated on the membranes used in this study were as follows: α-SMA(1:500; Affinity, Changzhou, China), Col1α1 (1:1000; Abcam, Cambridge, MA, USA), Notch2 (1:1000; Cell Signaling Technology, Beverly, MA, USA), Notch3 (1:1000; Abcam), Hes1 (1:1000; Abcam), β-actin (1:1000; Abcam), GAPDH (1:2500; Abcam), and Vinculin (1:1000; Abcam). The expression levels of β-actin, GAPDH, or Vinculin were used as the control for total protein amount. Horseradish peroxidase (HRP)-conjugated goat anti-rabbit immunoglobulin G (IgG) (1:1000; Cell Signaling Technology) was used as a secondary antibody at room temperature for 1 h. Protein bands were detected using the chemiluminescence HRP substrate (Millipore). The densitometric analysis of immunoblots was measured by Gel-Pro Analyzer software (Media Cybernetics, Rockville, MD, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!