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3 protocols using ab62505

1

Immunofluorescence Staining of Protein Markers

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After infection, cells were fixed for 15 min with 3.7% formaldehyde, permeabilized with Triton X-100 (0.25% in 5% FBS/PBS) for 10 minutes and blocked with 5% FBS/PBS for 1 hour at room temperature. Primary rabbit antibodies: anti–IRF-7 antibody (1:200, ab62505, Abcam), anti-PapG pre-absorbed serum (1:1,000), anti-TWIK-1 (1:50 sc-28630, Santa Cruz biotechnologies), anti-TRAAK (1:50, sc-50413, Santa Cruz biotechnologies), anti-KCNJ2 (1:100, 3305–1, Epitomics), anti-KCNJ11 (1:100 APC-202, Alomone Labs), anti-TRPC1 (1:100, ACC-010, Alomone Labs), anti-TRPV6 (1:250 orb158655, Biorbyt) and secondary goat anti-rabbit Alexa Fluor 488–conjugated antibody (1:200, A-11034, Thermo Fisher Scientific) were used. Nuclei were stained with DRAQ-5 (ab108410, Abcam). Slides were mounted using Fluoromount and examined in a LSM 510 META laser-scanning confocal microscope (Carl Zeiss). Fluorescence was quantified using the ImageJ software.
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2

Protein Expression Analysis in Infected Cells

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After infection, cells were lysed with NP-40 lysis buffer, supplemented with protease and phosphatase inhibitors (both from Roche Diagnostics). Total cellular proteins were run on SDS–polyacrylamide gel electrophoresis (4 to 12% bis-tris gels; Invitrogen), blotted onto poly-vinylidene difluoride membranes (GE Healthcare), blocked with 5% non-fat dry milk (NFDM), and incubated with rabbit anti–IRF-7 (1:300, ab62505, Abcam, Cambridge, United Kingdom) rabbit anti-TRPC1 (1:500, #ACC-010, Alomone Labs) and rabbit anti-TRPV6 (1:500, #orb158655, Biorbyt) antibodies. The blots were washed with PBS Tween 0.1% (PBST) and incubated with HRP-linked secondary antibodies in 5% NFDM (1:4,000, goat anti-rabbit- horseradish peroxidase (HRP), #7074, Cell Signaling). The anti-β-actin (1:4,000 in 5% NFDM, #A1978, Sigma-Aldrich) followed by rabbit anti-mouse Immunoglobulins HRP-linked (1:4,000 in 5% NFDM, P0260, Dako) was used as loading control. The blots were washed with PBST and developed with ECL Plus detection reagent (GE Healthcare). Blots were imaged using the Bio-Rad ChemiDoc System (Bio-Rad) and quantification of densitometry of bands was done using the ImageJ software (NIH).
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3

Immunofluorescence Analysis of RIP1-Deficient A549 Cells

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Eight-well Lab-Tek II chamber slides (Nunc) were seeded with RIP1 knockdown stable clones of A549 cells (4 × 104/well), and the cells were transduced with vAcE baculovirus at an MOI of 50 for various times as indicated. 24 hpt, the cells were washed three times with Dulbecco’s PBS (DPBS; Invitrogen) and fixed with 4% paraformaldehyde for 10 min. Cells were washed three times with DPBS buffer and then permeabilized by incubation with −20°C 100% acetone for 10 min. After three 5-min washes in DPBS, the cells on the slides were blocked with blocking buffer (10% FBS in DPBS) for 1 hr and then incubated with the appropriate primary antibodies (1:150 dilution in blocking buffer) overnight at 4°C. Primary antibodies were pNF-κB (Ser536) (3033, Cell Signaling Technology), IRF3 (ab50772, Abcam), or IRF7 (ab62505, Abcam). Cells were then washed three times with washing buffer (0.1% Tween 20 in DPBS, DPBS-T) and incubated for 1 hr in the dark with 1:200 dilutions of Alexa Fluor 405 goat anti-mouse immunoglobulin G (IgG) for IRF3 or Alexa Fluor 555 goat anti-rabbit IgG for pNF-κB and IRF3 (Invitrogen). Cells were then stained with Hoechst 33342 (Invitrogen) for 15 min before being washed three times in washing buffer and sealed with aqueous mounting medium (HIS002B, Serotec). Fluorescent images were visualized with a Zeiss laser confocal microscope (LSM510).
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