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9 protocols using anti cd4 gk1

1

Profiling TC-1 Tumor-Infiltrating Immune Cells

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To analyze TC-1 tumor-infiltrating cells, the tumors grown on C57BL/7 mice for 7 days were inoculated with 2 × 105 TC-1 cells via subcutaneous injection. TC-1 tumors were dissected by scissors and then cut into small pieces <2 mm. Next, the small pieces of tumor were further ground by using a syringe plunger to pass through 70-mm cell strainers to gather single cells. The cells (5 × 106) were washed with 2 mL staining buffer (PBS with 1% FBS and 0.04% sodium azide) and resuspended in 0.5 mL staining buffer. To detect the DC, T cell, and myeloid cell populations, the cells were stained with anti-CD8 (53-6.7, FITC; PECy7, BioLegend, San Diego, CA, USA), anti-CD4 (GK1.5, FITC, BD), CD25 (PE, eBioscience), Foxp3 (PECy7, eBioscience), anti-CD45 (EM-05, APC, GeneTex), anti-CD11b (M1/70, PE, eBioscience), anti-Gr-1 (RB6-8C5, PECy7, eBioscience), anti-F4/80 (BM8, FITC, BioLegend), and anti-CD11c (N418, BioLegend) antibodies. Cell populations were analyzed by Attune NxT flow cytometer (Thermo Fisher Scientific, Eugene, OR, USA).
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2

Tumor Immune Cell Isolation Protocol

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Tumors were excised, weighed, and mechanically minced. Minced tumors were placed in gentle MACS Dissociator with Tumor Dissociation Kit for mouse tissues (Miltenyi Biotec, San Diego, CA, United States) to isolate immune and tumor cell subsets in accordance with the manufacturer’s directions. The cell suspension was passed through a 40-μm cell strainer (Falcon 352340) and washed twice. The responded cells were lysed with red blood cell lysis buffer (ACK) and incubated with mouse immunoglobulin G in FACS buffer for 15 min at 4°C. Tumor-infiltrating cells were stained with fluorochrome-conjugated anti–mouse antibodies, as well as appropriate isotype control antibodies. The following monoclonal antibodies and reagents were obtained from BD Bioscience (San Jose, CA, United States): anti-CD45 (30-F11, 1:200 dilution), anti-CD3 (clone 145-2c11, 1:200 dilution), anti-CD4 (GK1.5, 1:200 dilution), and anti-CD8 (clone 53–6.7, 1:200 dilution). Flow cytometry was carried out with LSRII flow cytometer (BD Biosciences, San Jose, CA, United States), and data were analyzed with FlowJo software (v.10.4; Tree Star, San Carlos, CA, United States).
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3

Antibody Characterization for T Cell Analysis

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Antibodies with the following specificities were used. For flow cytometry: anti–IL-7Rα (A7R34, eBioscience) and immunoglobulin G (IgG) isotype control (BD Pharmingen); for in vitro stimulation: anti-TCRβ (H57–957, BD Pharmingen) and anti-CD2 (RM2–5, BD Pharmingen); for Western blotting: anti-Jak1 (73/JAK1, BD Pharmingen and Cell Signaling Technology), anti-STAT5 (Cell Signaling Technology), anti-Lck (BD Pharmingen), anti-pSTAT5 (BD Pharmingen), anti-actin (C4, Millipore), and anti-Jak3 (Millipore); and for protein immunoprecipitation: anti-Jak1 (Santa Cruz Biotechnology), anti-Jak3 (Millipore), and anti-γc (Santa Cruz Biotechnology). Biotinylated anti-CD4 (GK1.5, BD Pharmingen) and anti-CD8 antibodies (53–6.7, BD Pharmingen) were used to deplete CD4+ and CD8+ T cells, respectively.
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4

Signaling Dynamics of Stimulated T Cells

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1–2 million T cells purified as described above were stimulated in vitro. T cells were labeled on ice with 10μg/ml biotinylated anti-CD3 (2C11, BD Biosciences, CA) and anti-CD4 (GK1.5, BD Biosciences, CA) and washed in cold 1xPBS. The antibody coated cells (in 100μl) were added to a pre-warmed solution of 5 μg/ml Streptavidin (Jackson Immuno, ME) in 1xPBS at 37°C. At various time points, the reactions were stopped by directly adding excess if 4%PFA (buffered in 1xPBS). The fixed cells were permeabilised with 0.1% Triton X-100 and stained with antibodies to detect specific signaling intermediates as described in the text (all from BD Biosciences, CA).
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5

Cytokine Profiling in Murine Leishmaniasis

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Spleen cells were collected from mice (n = 8 per group) euthanized at 30 days after the last vaccine dose (before infection) and at 45 days post-infection (after infection). Splenocytes (5 × 106 cells/mL) were plated in 24-well plates (Nunc) in complete RPMI 1640 medium (non-stimulated, control) or stimulated with ChimeraT or L. infantum SLA (10.0 and 25.0 μg/mL, respectively) for 48 h at 37 °C in 5% (v/v) CO2. IFN-γ, IL-4, IL-10, IL-12p70, and GM-CSF levels were quantified in spleen cell culture supernatants by capture ELISA (BD OptEIA TM set mouse kits; Pharmingen, USA), following the manufacturer’s instructions. The presence of nitrite in cell supernatants was quantified by Griess reaction [56 (link)]. In addition, the IFN-γ-producing T-cell profile in the ChimeraT/Saponin and ChimeraT/Liposome groups was evaluated by the addition of anti-CD4 (GK 1.5) or anti-CD8 (53-6.7) monoclonal antibodies into the in vitro cultures (5 μg of each antibody; Pharmingen®, San Diego, CA, USA), for a period of 48 h at 37 °C with 5% CO2. Anti-IL-12 monoclonal antibody (C17.8; 5 μg; Pharmingen) was included as a positive control. Appropriate isotype-matched controls (rat IgG2a (R35-95) and rat IgG2b (95-1)) were used.
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Isolation and Characterization of NK Cell Lineages

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To isolate CLPs, pre-NKPs, NKPs, mNK and eNK cells, Tibiae and femora were flushed with PBS and erythrocytes were lysed. We enriched for NK cells and their precursors by depletion of CD3+, F4/80+, Gr-1+ (anti-CD3-Bio (145-2C11, 1:100, BioLegend), anti-F4/80-Bio (CI:A3-1, 1:200, Serotec), anti-Gr-1-Bio (RB6-8C4, 1:400, BD Biosciences), Streptavidin Microbeads, Milteny Biotec.) and CD19+ cells (CD19 Microbeads, Milteny Biotec.) using an autoMACS pro-separator (Miltenyi Biotec). CLPs (live, CD45+LinCD122CD127+CD135+CD244+), pre-NKPs (live, CD45+LinCD122CD127+CD135CD244+), NKPs (live, CD45+LinCD122+CD244+CD27+CD49bNKp46), mNK (live, CD45+LinCD122+CD244+CD49b+NKp46+) and eNK cells (live, CD45+LinCD122+CD244+CD49b+ NKp46) were sorted with an AriaIII Sorter directly into RLT lysis buffer (Qiagen) or into MyeloCult M5300 media if further in vitro culturing was required. The following markers were included in the lineage staining (anti-CD3 (17A2, 1:100, BioLegend); anti-CD19 (1D3, 1:200, BD Biosciences); anti-CD14 (mC5-3, 1:400, BD Biosciences); anti-Gr-1 (RB6-8C4, 1:400, eBioscience), anti-CD8 (53-6.7, 1:400, BD Biosciences); anti-CD4 (GK1.5, 1:400, BD Biosciences). The characterization of NKPs was performed according to Fathman et al.30 (link)
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7

Transwell Assay for T Cell Transmigration

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LSEC were cultured overnight on gelatine-coated transwell membranes with a 5 μm pore size (Corning, Sigma-Aldrich) to form confluent cell layers [18 (link)]. LSEC were treated with the specific clathrin inhibitor CPZ (30 μM) [25 (link)], the caveolae-specific inhibitors nystatin (10 μM) or filipin (15 μM) [26 (link)] or the CXCR4 antagonist AMD3100 (10 μM) [27 (link)] added to the lower chamber of the transwell for 10 min (CPZ, nystatin, filipin) or 60 min (AMD3100). After washing, LSEC layers were pre-incubated with the chemokine (CXCL12, 50 nM; CXCL9, CXCL10, both 100 nM; all R&D Systems) applied to the lower chamber of the transwell for 120 min. After removal of the chemokine, 5x105 total CD4+ T cells were added to the upper chamber of the transwell and were allowed to transmigrate across the LSEC layer for 90 min. Transmigrated cells from the lower chamber or from the input were mixed with Fluoresbrite beads (Polysciences, Eppelheim, Germany), stained with anti-CD4 (GK1.5) and anti-CD45RB antibody (16A; both BD Biosciences) and analyzed by flow cytometry. Absolute cell numbers were determined by gating on CD4+ for total or CD45RBlow CD4+ for effector/memory CD4+ T cells in relation to defined numbers of beads.
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8

Immunofluorescence Staining of Human Tonsils and Mouse Spleen

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For human tonsils, frozen sections of tonsils, 6 μm in thickness, were fixed with cold acetone and stained with anti-CD3 (UCHT1l, BD Biosciences) and anti-Tox2 (LS-C29895, LSBio) followed by Alexa Fluor 568–conjugated anti-mouse IgG1 (A-21124, Molecular Probes) and Alexa Fluor 488–conjugated anti-rabbit (A-11070, Molecular Probes). Last, sections were counterstained for 2 min with 3 μM DAPI (4′,6-diamidino-2-phenylindole). For mice spleen, frozen sections, 6 μm in thickness, were fixed with True-Nuclear buffer (BioLegend) and stained with anti-CD4 (GK 1.5) and anti-Bcl6 (K112-91, BD Biosciences) at 4°C overnight followed by 20 min at room temperature for anti-IgD (11-26c.2a, BioLegend) in Perm/Wash buffer (BioLegend). Sections were mounted with ProLong Glass Antifade Mountant with NucBlue (Invitrogen) for DAPI counterstaining and sealing. Slide images were observed under a Leica SP5 confocal microscope with a PlanApo 20× objective (numerical aperture, 0.7) and a PlanApo 40× objective (numerical aperture, 1.25).
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9

Intratumoral T Cell Profiling

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To analyze intratumoral T cells, single-cell suspensions were prepared from fresh tumor tissues by physically passing through 100 μm cell strainers. Immune cells were enriched by density gradient centrifugation. 2-3 μl of Anti-CD45 (30-F11, BD Biosciences), anti-CD90 (53-2.1, BD Biosciences), anti-CD3 (145-2C11, BD Biosciences), anti-CD4 (GK1.5, BD Biosciences), and anti-CD8 (53-6.7, BD Biosciences) antibodies were added for 20 minutes for surface staining. The cells were then washed and resuspended in 1 ml of freshly prepared Fix/Perm solution (BD Biosciences) at 4 °C overnight, followed by washing with Perm/Wash buffer (BD Biosciences). All samples were read on an LSR Fortessa cytometer and analyzed with FACS DIVA software v. 8.0 (BD Biosciences).
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