Thymocytes were characterized using a multi-color staining. To discriminate DN, DP, SP4 and SP8 thymocyte subsets, we performed a three-color staining using the following mAbs: CD8 Vio-Blue (clone BW135/80), CD45 APC (5B1) and CD4 PerCP (VIT4) (all mAbs are from Miltenyi Biotec).
Peripheral blood mononuclear cells (PBMCs) were isolated by density gradient centrifugation using Lymphoprep (density: 1.077 g/ml; STEM CELL Technologies, Vancouver, Canada). To isolate total T cells we used the anti-human Pan T cells isolation kit (Miltenyi Biotec). To discriminate CD4+ and CD8+ T cell subsets we performed a four-color staining using the following mAbs: CD45 APC (clone 5B1), CD3 VioGreen (REA613), CD4 PE-Vio770 (M-T321) and CD8 PE (BW135/80) (all from Miltenyi Biotec).
Surface stainings were performed in PBS with 2% FBS and 0,1% sodium azide for 20 min at 4°C. Cells were acquired using a FACS CantoII (BD Biosciences, San Jose, CA, USA) and analyzed with Flow Jo Software (FLOWJO, LLC, Ashland, OR, USA).