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Fam labeled taqman universal pcr mastermix

Manufactured by Thermo Fisher Scientific
Sourced in United States

FAM-labeled Taqman universal PCR mastermix is a pre-formulated reagent mixture for quantitative real-time PCR (qPCR) assays. It contains all the necessary components, including a DNA polymerase, dNTPs, buffer, and a FAM-labeled probe, to perform PCR amplification and detection in a single reaction.

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5 protocols using fam labeled taqman universal pcr mastermix

1

Quantitative Transcriptional Profiling of Key Genes

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RNA was converted to cDNA using Applied Biosystems high capacity cDNA reverse transcriptase kit (Life Technologies) or the miScript II RT kit (Qiagen), as per manufacturer guidelines.
Gene expression of GATA2, VCAM-1, ET-1, YWHAZ, Topoisomerase-1, Cytochrome c1 and GUSB, B2M (Life Technologies) were quantified by real time PCR (qRT-PCR) on the CFX 384 (Bio-Rad, Hercules, CA) using FAM-labeled Taqman universal PCR master mix and its specific primer/probe set (Life Technologies) with the following run conditions: 50 °C for 2 minutes; 95 °C for 10 minutes, 95 °C for 15 seconds, 60 °C for 1 minute (40 cycles). GUSB, YWHAZ and B2M were used as housekeepers for PAXgene whole blood analyses. YWHAZ was used as a housekeeper for mRNA analyses on cells. Topoisomerase-1 and Cytochrome c1 were used as housekeepers for placental tissue. Data were analysed using the ΔΔCT method of analysis.
For microRNAs, the miScript SYBR green PCR kit was used. Housekeepers miR191, SNORD 44 and SNORD 48 were measured against miR126 and miR 221. The following conditions were used to carry out the PCR reaction-
Activation step: 95 °C for 15 mins, followed by 40 cycles of: 94 °C for 15 secs, 55 °C for 30 secs, 70 °C for 30 secs. Data were analysed using the ΔΔCT method of analysis.
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2

Quantification of Gene Expression in HUVEC, Placenta, and Omental Artery

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RNA was extracted from primary HUVECs, placenta, and omental arteries using the RNeasy mini kit (Qiagen, Valencia, CA, USA) and quantified using the Nanodrop ND 1000 spectrophotometer (NanoDrop Technologies Inc., Wilmington, DE, USA). We converted 0.2 μg of RNA to cDNA using the Applied Biosystems High-Capacity cDNA Reverse Transcriptase Kit (Life Technologies) as per the manufacturer’s guidelines.
The gene expression of VCAM1 (Hs01003372_m1), HO-1 (Hs01110250_m1), corin (Hs00198141_m1), NPPA (Hs00383230_g1), NPR1 (Hs00181445_m1), HUVEC housekeeper YWHAZ (Hs01122454_m1), placenta housekeepers TOP1 (Hs00243257_m1), and CYC1 (Hs00357717_m1) and omental artery housekeepers B2M (Hs00187842_m1) and Actin (Hs99999903_m1) (Life Technologies) were quantified by real-time PCR (RT-PCR) on the CFX 384 (Bio-Rad, Hercules, CA, USA) using FAM-labeled Taqman universal PCR mastermix and its specific primer/probe set (Life Technologies) with the following run conditions: 50 °C for 2 min; 95 °C for 10 min; 95 °C for 15 s; and 60 °C for 1 min (40 cycles).
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3

Quantitative Analysis of Placental Gene Expression

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RNA was extracted from 20 to 30 mg of RNAlater preserved frozen human placental samples by homogenization using a RNeasy mini‐kit (Qiagen, Hilden, Germany). One μg of RNA was converted to cDNA using Applied Biosystems high capacity cDNA Reverse Transcriptase Kit (Life Technologies, Carlsbad, CA). Taqman gene expression assays (Life Technologies) for human GDF‐15 (Assays ID: Hs00171132_m1), TOP1 (Assay ID: Hs00243257_m1), and CYC1 (Assay ID: Hs00357717_m1) were used. For comparisons between human placental samples, data were normalized to the geometric mean of 2 housekeepers; TOP1 and CYC1. qRT‐PCR was performed on the CFX 384 (Biorad, Hercules, CA) using FAM‐labeled Taqman universal PCR master mix (Life Technologies) with the following run conditions: 50 °C for 2 minutes; 95 °C for 10 minutes, 95 °C for 15 seconds, 60 °C for 1 minute (40 cycles).
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4

Quantification of Trophoblast and HUVEC Gene Expression

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RNA was extracted from primary trophoblast and HUVECs using an RNeasy mini kit (Qiagen, Valencia, CA) and quantified using the Nanodrop ND 1000 spectrophotometer (NanoDrop technologies Inc, Wilmington, DE). 0.2 μg of RNA was converted to cDNA using Applied Biosystems high capacity cDNA reverse transcriptase kit (Life Technologies) as per manufacturer guidelines.
Gene expression of VCAM-1, ET-1, MMP 14, HO-1, Endoglin, TIMP3, NQO1, GCLC, TXN, YWHAZ and GAPDH (Life Technologies) were quantified by real time PCR (RT-PCR) on the CFX 384 (Bio-Rad, Hercules, CA) using FAM-labeled Taqman universal PCR mastermix and its specific primer/probe set (Life Technologies) with the following run conditions: 50 °C for 2 minutes; 95 °C for 10 minutes, 95 °C for 15 seconds, 60 °C for 1 minute (40 cycles). SYBR RT-PCR was carried out to assess gene expressions of sFlt-1 e15a and sFlt-1 i13, YWHAZ and GAPDH. Primers were designed as previously described (Geneworks, South Australia, Australia)21 (link). RT-PCR was performed using the following run conditions: 95 °C for 20 minutes; 95 °C for 0.01 minutes, 60 °C for 20 minutes, 95 °C for 1 minute (39 cycles), melt curve 65 °C to 95 °C at 0.05 °C increments at 0.05 seconds.
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5

Placental Gene Expression in Preterm, Preeclampsia, and IUGR

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qPCR analysis was conducted on mRNA extracted from preterm control, preeclampsia + IUGR and IUGR placentas. Extraction of RNA from placental cytotrophoblasts and explants were performed with the RNAeasy mini kit (Qiagen, Valencia, CA, USA), according to the manufacturer’s instructions and quantified using the Nanodrop ND 1000 spectrophotometer (NanoDrop technologies Inc., Wilmington, DE, USA). RNA (0.2 μg) was converted to cDNA using the Applied Biosystems high-capacity cDNA reverse transcriptase kit (Life Technologies, Carlsbad, CA, USA) in line with the manufacturer’s guidelines. We assessed gene expressions of SLC38A1 (Hs01562175_m1), SLC38A2 (Hs01089954_m1), and SLC38A4 (Hs00394339_m1) (Taqman probes, Life Technologies) by real time PCR (RT-PCR) on the CFX 384 (Bio-Rad, Hercules, CA) using FAM-labeled Taqman universal PCR mastermix and its specific primer/probe set (Life Technologies) with the following run conditions: 50 °C for 2 min, 95 °C for 10 min, 95 °C for 15 s, and 60 °C for 1 min (40 cycles). Quantification was performed using the 2–∆Ct method, normalising expression to the average expression of housekeeper genes CYC1 (Hs00357717_m1) and TOP1 (Hs00243257_m1). Results are presented as mRNA expression (2–∆Ct).
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