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Superscript 3 platinum kit

Manufactured by Thermo Fisher Scientific

The SuperScript III Platinum Kit is a laboratory equipment product designed for cDNA synthesis. It provides a reagent system for the reverse transcription of RNA to cDNA, which is a crucial step in various molecular biology applications.

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19 protocols using superscript 3 platinum kit

1

Quantitative RT-PCR for Gene Expression

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Total RNA was extracted from cultured cells using Genelute Mammalian Total RNA kit (Sigma) according to the manufacturer’s protocol. RNA was quantified by spectrophotometric analysis and 1 μg of RNA was used to synthesize cDNA (SuperScript III Platinum Kit, Life Technologies). Real-time PCR analysis was performed using Stratagene MX3000P personal Q-PCR in the presence of SYBR Green. The PCR reagents were provided in SuperScript III Platinum Kit (Life Technologies), and the conditions were chosen according to manufacturer’s protocol. Primers were as follows: GAPDH forward primer: 5′-GGCCTCCAAGGAGTAAGACC-3′, reverse primer: 5′-AGGGGTCTACATGGCAACTG-3′; MCT1 forward primer: 5′-TTCGGGTGGCTCAGCTCCGT-3′, reverse primer: 5′-CCTCCTCCTTGGGCCCTCCA-3′; COX1 forward primer: 5′-TCCGCTACCATAATCATCGCT-3′, reverse primer 5′-CCGTGGAGTGTGGCGAGT-3′. Mean threshold cycle (Ct) values were determined by Stratagene software using three distinct amplification curves for each gene. Relative expression of the target gene was estimated using the formula: relative expression = 2×∆Ct, where ∆Ct = Ct (target gene) – Ct (GAPDH).
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2

Absolute Quantification of TRIM23 mRNA

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To determine the absolute copy number of TRIM23 transcripts in the Human Total RNA Master Panel II (Clontech), qPCR was performed in one step using 20 ng of the individual cDNA library samples and the SuperScript III Platinum Kit (Invitrogen) on a 7500 Fast Real-Time PCR Machine (Applied Biosystems) according to the manufacturer’s instructions. A TaqMan probe for the TRIM23 gene was acquired as premixed (IDT) master mix and added to the reaction. A standard of known concentration was serially diluted to determine the absolute numbers of TRIM23 mRNA in the individual tissues.
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3

Quantifying HPIP Expression in Cervical Cancer

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Total RNA was isolated from cervical cancer tissues and normal cervical tissues (n=18) using TRIzol reagent (Invitrogen Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s protocol. The Superscript III Platinum Kit (Invitrogen) was used to reverse transcribe this total RNA into cDNA. Real-time PCR was performed with SYBR Green Master Mix (TaKaRa, Kyoto, Japan) using the following primers against HPIP: Forward, 5'-CCACCCACTTCTCTCAACTC-3'; Reverse, 5'-GATGAGGCTGCCAGGATA-3'. β-actin served as an internal reference; its expression was analyzed using the following primers: Forward, 5'-CTTAGTTGCGTTACACCCTTTCTTG-3'; Reverse, 5'-CTGTCACCTTCACCGTTCCAGTTT-3'. The experiments were performed in triplicate in the same reaction, and the results of the real-time quantitative RT-PCR experiments were analyzed using the 2−ΔΔCt method.
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4

Quantifying Pseudomonas aeruginosa fleS Expression

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WT P. aeruginosa (PAO1), ΔfleN, vector control, and strains complemented with fleNWT, fleN L263W, and fleNTP255 were grown overnight in LB medium. The overnight cultures were diluted 1:100 in LB medium to set up a secondary culture and grown to an OD600 of 0.4 to 0.6 for total RNA extraction. The cultures (3 ml) were mixed with 6 ml of a bacterial RNA protect solution (Qiagen), and the mixtures were centrifuged at 4000 rpm for 20 min to harvest the cells. One milliliter of TRIzol (Invitrogen) was added to resuspend the pellets, and the cells were lysed using sonication. The RNeasy Mini Kit (Qiagen) was used for RNA extraction and purification. The concentration (A260) and quality (A260/A280 > 2, A260/A230 > 2) of RNA were estimated using NanoDrop (Thermo Fisher Scientific). The SuperScript III Platinum Kit (Invitrogen) was used for one-step qRT-PCR. The rpoD gene was used as the reference gene. The relative levels of fleS gene expression of the cells were calculated by relative quantification using the reference gene. SDs were calculated from independent replicates.
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5

Quantification of TRIM44 mRNA in Cervical Cancer

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The expression of TRIM44 mRNA was quantitated by real-time RT-PCR. Briefly, total RNA was extracted from cervical cancer tissues and normal cervical tissues (n=9) using TRIzol reagent (Invitrogen Life Technologies, Carlsbad, CA, U.S.A.) according to the manufacturer’s protocol. The Superscript III Platinum Kit (Invitrogen) was used to reverse transcribe this total RNA into cDNA. Real-time PCR was performed with SYBR Green Master Mix (TaKaRa, Kyoto, Japan) using the following primers against TRIM44: Forward, 5′- GGCTTGATTTGAGTACCTATT-3′; Reverse, 5′-AGTCCACCTGAGTCTTTGC-3′. β-actin served as an internal reference; its expression was analyzed using the following primers: Forward, 5′-CGGGAAATCGTGCGTGAC-3′; Reverse, 5′-GTCAGGCAGCTCGTAGCTCTT-3′. Relative quantitation of TRIM44 mRNA was conducted using the 2−ΔΔCT method, followed by normalization using the internal control.
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6

One-step qRT-PCR with GAPDH normalization

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Total RNA was extracted from cells using the HP Total RNA Kit (OMEGA bio-tek) according to the manufacturer’s instructions. Reverse transcription and qRT-PCR was performed in one step using 2 µl (~ 400 ng) of the purified RNA samples as templates (SuperScript III Platinum Kit, Invitrogen) on a 7500 Fast Real-Time PCR Machine (Applied Biosystems) according to the manufacturer’s instructions. TaqMan probes for each individual gene were acquired as premixed master mixes (IDT) and added to the reaction. Expression level for each target gene was calculated by normalizing against GAPDH using the ΔΔCT method, and represented relative to the values for mock-treated cells, which were set to 1.
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7

Quantifying HPIP mRNA Expression in Endometrial Cancer

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The expression of HPIP mRNA was quantified by RT‐PCR. Nine samples were used for real‐time PCR, including five endometrial cancer samples and four normal tissue samples. Total RNA was isolated using a TRIzol reagent (Wanlei) and converted to cDNA using the SuperScript III Platinum Kit (Invitrogen). Primers for HPIP are as follows: Forward, 5′‐ TTCTGGATGGCAGGAAGAT‐3; Reverse, 5′‐TCAAGGAGTCAAAGGAGGC‐3. The primer sequence for β‐actin as a reference is as follows: Forward, 5′‐CGGGAAATCGTGCGTGAC‐3; Reverse, 5′‐GTCAGGCAGCTCGTAGCTCTT‐3. Real‐time PCR was performed with SYBR® Fast qPCR Mix (TaKaRa). Relative HPIP abundance was determined by the 2-ΔCT method. This experiment was repeated three times.
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8

One-step qRT-PCR with GAPDH normalization

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Total RNA was extracted from cells using the HP Total RNA Kit (OMEGA bio-tek) according to the manufacturer’s instructions. Reverse transcription and qRT-PCR was performed in one step using 2 µl (~ 400 ng) of the purified RNA samples as templates (SuperScript III Platinum Kit, Invitrogen) on a 7500 Fast Real-Time PCR Machine (Applied Biosystems) according to the manufacturer’s instructions. TaqMan probes for each individual gene were acquired as premixed master mixes (IDT) and added to the reaction. Expression level for each target gene was calculated by normalizing against GAPDH using the ΔΔCT method, and represented relative to the values for mock-treated cells, which were set to 1.
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9

Absolute Quantification of TRIM23 mRNA

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To determine the absolute copy number of TRIM23 transcripts in the Human Total RNA Master Panel II (Clontech), qPCR was performed in one step using 20 ng of the individual cDNA library samples and the SuperScript III Platinum Kit (Invitrogen) on a 7500 Fast Real-Time PCR Machine (Applied Biosystems) according to the manufacturer’s instructions. A TaqMan probe for the TRIM23 gene was acquired as premixed (IDT) master mix and added to the reaction. A standard of known concentration was serially diluted to determine the absolute numbers of TRIM23 mRNA in the individual tissues.
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10

RNA Extraction, cDNA Synthesis, and qPCR Analysis

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An RNeasy Mini Kit (217184, Qiagen, CA, USA) was used to extract RNA based on provided direction. Following analyses of RNA integrity and purity, a superscript III platinum kit (R250-01, Invitrogen) was used based on provided directions to prepare cDNA. SYBR Green I (CS7561, Invitrogen) was then used to conduct qPCR analyses with the ABIPrism 7500 instrument (Applied Biosystems) with the following settings: 40 cycles of 95°C for 10 s, 60°C for 30 s, and 70°C for 45 s. Relative gene expression was assessed based upon comparative threshold cycle (CT) values via the 2(−ΔΔCt) method, with GAPDH having been used for normalization. Primers were designed in accordance with target gene DNA sequences. The sequences of the primers used were as follows:
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