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4 protocols using peroxidase coupled secondary antibodies

1

Western Blot Analysis of Cellular Proteins

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Whole cell lysates were prepared from cells, separated on Novex 4–20 % gradient tris-glycine gel (XV04205PK20, Invitrogen) and transferred to PVDF membrane. The membranes were incubated with 5 % milk for 1 h and incubated with primary antibodies overnight at 4 °C. Primary antibodies used were as follows: M. hyorhinis (P70 surface antigen) (1:1000, EMZ104, Kerafast, Boston, MA), IκB-α (1:1000, 9242, Cell Signaling Technology (CST), Danvers, MA), TNF-α (1:1000, 8184, CST), Caspase-8 (1:1000, 9746, CST), Cleaved Caspase-8 (1:1000, 9496, CST), Caspase-9 (1:1000, 9502, CST), Cleaved Caspase-3 (1:1000, 9661, CST), poly (ADP-ribose) polymerase (PARP) (1:1000, 9542, CST), c-IAP1 (1:1000, 7065, CST), c-IAP2 (1:1000, 3130, CST), β-actin (1:5000, 4970, CST), and α-tubulin (1:5000, sc-8035, Santa Cruz Biotechnology, Santa Cruz, CA). Blots were incubated with peroxidase-coupled secondary antibodies (Promega, Madison, WI) for 1 h, and protein expression was detected with SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL).
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2

Western Blot Analysis of Embryonic Signaling

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Whole cell lysates were prepared from E10.5 embryo head or E9.5 embryo using NP40 lysis buffer (50 mM Tris-HCl, pH7.4, 200 mM NaCl, 2 mM MgCl2, 1% Nonidet P-40 (NP-40), 1 mM PMSF, 1 μg/ml leupeptin, 2 μg/ml aprotinin, and 1 μg/ml pepstatin). Proteins were separated on Novex 4–20 % Tris-Glycine Gel (Invitrogen) and transferred to PVDF membrane. The membranes were incubated with 5% milk for 1 h and incubated with primary antibodies overnight at 4°C. Primary antibodies were used as follows: phospho-Smad1/5/9 antibody (1:1000, #13820, Cell Signaling), phospho-mTOR (Ser2448) (1:1000, #2971, Cell Signaling), mTOR (1:1000, #2972, Cell Signaling), phospho-S6K1 (Thr389) (1:500, #9205, Cell Signaling), S6K1 (1:1000, #9202, Cell Signaling), phospho-S6 (Ser235/236) (1:2000, #2211, Cell Signaling), phospho-S6 (Ser240/244) (1:2000, #5364, Cell Signaling), S6 (1:2000, #2217, Cell Signaling), TSC1 (1:1000, #6935, Cell Signaling), and β-actin (1:1000, #4970, Cell Signaling). Blots were incubated with peroxidase-coupled secondary antibodies (Promega) for 1 h, and protein levels were detected with SuperSignal West Pico or Femto Chemiluminescent Substrate (Thermo Scientific). Images were quantified by ImageJ software (NIH).
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Protein Expression Analysis by Western Blot

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Whole cell lysates were prepared from cells, separated on SDS-polyacrylamide gel and transferred to PVDF membranes. The membranes were incubated with 5% milk in PBS for 1 hr and then incubated with primary antibodies overnight at 4°C. Blots were incubated with peroxidase-coupled secondary antibodies (Promega) for 1 hr, and protein expression was detected with SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific).
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4

Western Blot Analysis of Angiogenic Factors

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Whole cell lysates were prepared from cells, separated on 10% SDS-polyacrylamide gel and transferred to PVDF membrane. The membranes were incubated with 5% milk for 1 h and incubated with primary antibodies overnight at 4°C. Primary antibodies used were as follows: VEGF (1:1000; Santa Cruz, Santa Cruz, CA), FGF-2 (1:1000; Santa Cruz), phospho-S6K1 (Thr389) (1:1000; Cell Signaling, Danvers, MA), S6K1 (1:1000; Cell Signaling), phospho-S6 (Ser 240/244) (1:4000; Cell Signaling), and S6 (1:4000; Cell Signaling). Blots were incubated with peroxidase-coupled secondary antibodies (Promega, Madison, WI) for 1 h, and protein expression was detected with SuperSignal West Pico Chemiluminescent Substrate (Thermo Scientific, Rockford, IL). Membranes were reprobed with anti-GAPDH antibody (Chemicon, Temecula, CA) to control for equal loading.
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