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3 protocols using goat anti chicken alexa fluor 647

1

Whole-Mount Confocal Microscopy of Mice and Live-Imaging of Zebrafish

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For mice, whole-mount confocal microscopy was performed as described (Yokomizo et al. 2012 (link)). Embryos were stained with rat anti-CD31 (MEC13.3, BD Biosciences), rabbit anti-Runx (EPR3099, Abcam), chicken anti-GFP (Invitrogen Molecular Probes), and rat anti-F4/80 (CI: A3-1, Abcam) primary antibodies and goat anti-rat Alexa Fluor 555 (Abcam), goat anti-rabbit Alexa Fluor 488, goat anti-chicken Alexa Fluor 647 (Jackson Immunoresearch), and goat anti-rat Alexa Fluor 647 (Invitrogen Molecular Probes) secondary antibodies. Specimens were analyzed using a Zeiss LSM 710 confocal microscope with 25× objectives using multitrack sequential mode. The pinhole was set at 1 airy unit; for three-dimensional (3D) reconstructions, steps were 5 µm per z-section.
For zebrafish, fluorescent reporter embryos were treated as indicated in the text and live-imaged under tricaine anesthesia as previously described (North et al. 2007 (link)) using a Zeiss SteREO Discovery V8 microscope.
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2

Microscopic Imaging of Embryonic Vasculature

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Embryos were prepared as previously described (Yokomizo et al., 2012 (link)). A Zeiss LSM 710 AxioObserver inverted confocal microscope with ZEN 2011 software was used to acquire Z-projections and single optical projections. Images were processed using Fiji software (Schindelin et al., 2012 (link)). 3-dimensional reconstructions were produced using Volocity software (PerkinElmer). The following primary antibodies were used; rat anti-mouse CD31 (Mec 13.3, BD Pharmingen, San Diego, CA), rat anti-mouse CD117 (2B8, eBioscience, San Diego, CA), chicken anti-GFP (polyclonal, Thermo Fisher Scientific, Waltham, MA), rabbit anti-mouse Prox1 (AngioBio, San Diego, CA) and rabbit anti-human/mouse Runx (EPR3099, Abcam, Cambridge, MA). Secondary antibodies used were goat anti-rat Alexa Fluor 647 (Invitrogen, Carlsbad, CA), goat-anti rat Alexa Fluor 555 (Abcam), donkey anti-rat Alexa Fluor 555 (Abcam), goat anti-chicken Alexa Fluor 647 (Jackson ImmunoResearch, West Grove, PA) and goat anti-rabbit Alexa Fluor 488 (Invitrogen).
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3

Zebrafish Embryo Imaging and Analysis

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Embryos were prepared as previously described (Yokomizo et al., 2012 (link)). A Zeiss LSM 710 AxioObserver inverted confocal microscope with ZEN 2011 software was used to acquire Z-projections and single optical projections. Images were processed using Fiji software (Schindelin et al., 2012 (link)). 3-dimensional reconstructions were produced using Volocity software (PerkinElmer). The following primary antibodies were used; rat anti-mouse CD31 (Mec 13.3 , BD Pharmingen, San Diego, CA), rat anti-mouse CD117 (2B8, eBioscience, San Diego, CA), chicken anti-GFP (polyclonal, Thermo Fisher Scientific, Waltham, MA) and rabbit anti-human/mouse Runx (EPR3099, Abcam, Cambridge, MA). Secondary antibodies used were goat anti-rat Alexa Fluor 647 (Invitrogen, Carlsbad, CA), goat-anti rat Alexa Fluor 555 (Abcam), donkey anti-rat Alexa Fluor 555 (Abcam), goat anti-chicken Alexa Fluor 647 (Jackson ImmunoResearch, West Grove, PA) and goat anti-rabbit Alexa Fluor 488 (Invitrogen).
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