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4 protocols using ab109241

1

Quantifying Protein Expression in MSCs

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MSCs were lysed for SDS–PAGE. After electrophoresis, the denatured protein samples were transferred onto nitrocellulose membranes for incubation with primary antibody. Antibodies against PD-L1 (ab213524, Abcam, 1:1000 dilution), TP53 (2527 S, Cell Signaling Technology, 1:1000 dilution), P21 (ab109520, Abcam, 1:1000 dilution), GATA2 (ab109241, Abcam, 1:1000 dilution) and β-Actin (abs137975, Absin Bioscience Inc, 1:1000 dilution). After incubation with the primary antibodies overnight at 4 °C, the membranes were washed with TBST, followed by another incubation with HRP-conjugated secondary Goat Anti-Mouse IgG (H+L) antibody (115-035-003, AffiniPure, 1:1000 dilution) or Goat Anti-Rabbit IgG (H+L) antibody (111-035-003, AffiniPure, 1:1000 dilution) for 2 h at room temperature. The specific signals from the HRP-ECL reaction were visualized with a ChemiDoc imaging system (Bio-Rad). Relative quantification of protein bands from the Western blot images was performed with ImageJ software (version 1.52p).
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2

GATA2 Binding Analysis of PD-L1 Promoter

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ChIP assay was performed using the SimpleChIP Plus Enzymatic Chromatin IP Kit (#9005, Cell Signaling Technology). Chromatin was fragmented using the Bioruptor Pico sonication device (Diagenode). The fragmented chromatin was immunoprecipitated with either 3 μg antibody against GATA2 (ab109241, Abcam, 1:50 dilution) or nonspecific rabbit IgG as a negative control, at 4 °C for 12–16 h. Two primers were designed to detect GATA2 binding fragments at −153 bp (primer 1) and 93 bp (primer 2) of PD-L1. Primers for PD-L1 promoter binding site were listed in Supplementary Data 13.
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3

Western Blot Analysis of EMT Markers

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Total protein from cells and tissue samples was extracted by using RIPA lysis buffer (Beyotime Biotechnology, Nantong, China). The protein concentrations were determined by using the Pierce BCA Protein Assay Kit (Thermo). The samples (30 μg for each sample) were separated by 10% SDS-PAGE and then transferred onto polyvinylidene difluoride membranes. After being blocked with 5% skimmed milk, the membranes were incubated at 4°C overnight with primary antibodies including: anti-E-cadherin (ab231303, 1:1000; Abcam, Cambridge, UK), anti-Vimentin (ab137321, 1:1500; Abcam), anti-Snail (ab31787, 1:1000; Abcam), anti-Slug (ab27568, 1:1000; Abcam), anti-GATA2 (ab109241, 1:1000; Abcam), anti-β-actin (ab8224, 1:2000; Abcam). Next, the membranes were incubated with HRP-conjugated secondary antibodies at room temperature for 1 h. Enhanced chemiluminescence was used to visualize protein bands. Lab Works 4.5 was used to quantitatively analyze the integrated optical density.
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4

Immunoblot Analysis of Hematopoietic Regulators

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Cells were collected and lysed in RIPA buffer with proteinase inhibitors. Immunoblot was performed using the standard protocol. Primary antibodies were used according to the manufacturer’s specifications: anti-CKIP-1 (D20, Santa Cruz), anti-GATA-1 (M20, Santa Cruz), anti-GATA-2 (ab109241, Abcam), anti-Fli-1(ab133485, Abcam), anti-c-Myb (ab109127, Abcam), anti-c-Myc (ab32072, Abcam), anti-NF-E2 (ab140598, Abcam) and anti-GAPDH (MBL).
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