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Alex 594

Manufactured by Thermo Fisher Scientific
Sourced in Japan, United States

Alex-594 is a fluorescent dye used in biological research applications. It is a small-molecule dye that emits fluorescence in the red-orange region of the visible spectrum when excited by light of the appropriate wavelength. Alex-594 can be used for various labeling and detection purposes in cell biology, microscopy, and other life science research.

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5 protocols using alex 594

1

Immunofluorescence Staining of Brain Sections

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For immunofluorescence staining, paraffin-embedded brain sections were prepared as described in our previous studies11 (link). The primary antibodies used in the experiments included anti-HMGB1 Ab (R&D Systems Inc., Minneapolis, MN), anti-AQP4 Ab (Abcam Plc, Cambridge, UK), anti-IL-1β Ab (R&D Systems Inc.), anti-microtubule-associated protein 2 (MAP2) Ab (Abcam Plc), anti-glial fibrillary acid protein (GFAP) Ab (Abcam Plc), anti-ionized calcium-binding adaptor molecule 1 (Iba1) Ab (Wako, Osaka, Japan) and anti-myeloperoxidase (MPO) Ab (Abcam Plc). In order to investigate the cellular source as well as the localization of IL-1β, double immunohistochemical staining was carried out with cell marker antibodies including MAP2, GFAP, iba1 or MPO antibodies and an antibody against IL-1β. The sections were then incubated with secondary Abs conjugated with Alexa-488, Alexa-555 or Alex594, which were purchased from Invitrogen (Tokyo, Japan). Finally, the sections were mounted using VECTASHIELD Hard Set Mounting Medium with DAPI (Vector Laboratories Inc., Burlingame, CA) and observed under an LSM 780 confocal microscopic system (Carl Zeiss Inc., Jena, Germany). The counting was performed in a blinded manner.
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2

Immunofluorescence Protocol for Drosophila Ovaries

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Immunofluorescence was performed as previously described (Hong et al., 2003 (link); Iida and Lilly, 2004 (link)). Primary antibodies used were as follows: rabbit anti-GFP (Invitrogen, 1:1000); rabbit anti-γ−H2Av (Active Motif, 1:500); rabbit anti-C(3)G 1:3000 (Hong et al., 2003 (link)); mouse anti-1B1 (Developmental Studies Hybridoma Bank, 1:100); mouse anti-γ-H2Av (Developmental Studies Hybridoma Bank, 1:5000); mouse anti-C(3)G (kindly provided by R. Scott Hawley, 1:200) (Page and Hawley, 2001 (link)). Alexa-488 and Alex-594 (Invitrogen, 1:1000) secondary antibodies were used for fluorescence. After staining, ovaries were mounted in prolong gold antifade reagent with DAPI (Life Technology). Images were acquired on either a Leica SP5 confocal microscope or Zeiss LSM 880 with Airyscan confocal microscope.
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3

Histological Analysis of Tissue Sections

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For hematoxylin and eosin (H&E) staining, tissues were fixed with buffered 10% formalin solution (SF93–20; Fisher Scientific, Fair Lawn, NJ) overnight at 4°C. Dehydration was achieved by immersion in a graded ethanol series of 70%, 80%, 95%, and 100% ethanol for 40 min each. Tissues were embedded in paraffin and subsequently cut into ultra-thin slices (5 μm) using a microtome. Tissues were deparaffinized by xylene (Fisher) and rehydrated by decreasing concentrations of ethanol and PBS. Tissue sections were stained with H&E and slides were scanned with an Aperio ScanScope. For frozen sections, tissues were fixed with periodate-lysine-paraformaldehyde (PLP) and dehydrated with 30% sucrose in PBS at 4°C overnight. The sections were incubated overnight at 4°C with anti-Iba1 (FujiFilm, #019-19741) and anti-CD-11b (Biolegend, #101204) diluted1:100. The signal was visualized with the secondary antibodies conjugated to Fluors Alex-488 or Alex-594 (Invitrogen) and nuclei were stained with 4′,6-Diamidino- 2-phenylindole dihydrochloride (DAPI). The slides were scanned using an Aperio ScanScope or visualized using confocal laser scanning microscopy (Nikon, Melville, NY).
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4

Quantifying Tumor Characteristics Using IHC

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Formalin-fixed tumors were cut into 4μm sections and processed for IHC using the UltraVision AEC Detection System (Thermo Scientific, TL-015-HAJ) with the following antibodies: c-Met (Abcam; ab10728), CXCR4 (Abcam; ab124824), Ki67 (Abcam; ab92742), Pimo (Hypoxyprobe ™), HIF-1α (BD Transduction Laboratories™; Cat: 610959), HIF-1β (BD Transduction Laboratories™; Cat: 611078) overnight at 4° C. Secondary antibodies conjugated with Alex 488, Alex 594, Alex 647 (Life Technologies™) were used to visualize the primary antibody’s staining. Images were acquired using Olympus Confocal Laser Scanning Biological Microscope FV1000 equipped with four lasers ranging from 405 to 635 nm. Images were processed with ImageJ software. The quantification of the positive cells was processed by using CellProfiler software (37 (link)).
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5

Immunohistochemical Analysis of Sciatic Nerve Myelination

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WT, PLP/P0, PLP/P0+/− and PLP-PNS mice at 1 and 3 months of age were perfused with 4% paraformaldehyde. Samples of 1-month-old sciatic nerves were teased for immunohistochemical PLP (AA3) staining. 3-month-old sciatic nerves were cut at 10 μm in a cryostat (Leica Microsystems, Exton, PA, USA) and cross sections were double-immunostained for the myelin proteins PLP (AA3, gift from Dr. Wendy Macklin) and P0 (Trapp et al., 1981 (link)). Secondary antibodies were conjugated with Alex 488 or Alex 594 (Life Technologies, Grand Island, NY, USA). Confocal images were collected using a Leica SP5 confocal microscope (Leica Microsystems).
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