The largest database of trusted experimental protocols

20 protocols using application suite advanced fluorescence las af

1

Quantification of Glutamatergic and GABAergic Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
The adjacent hippocampal brain sections (10 μm) from the same levels used for the detection of glutamatergic neurons and GABAergic neurons were incubated in 2 N HCl for DNA denaturation (n = 3), neutralised with 0.1 M boric buffer (pH 8.5) and then incubated in bovine serum and the primary antibodies: the mouse anti-glutamate (1:2000 dilutions, cat. no. 22523, Immuno Star Inc., WI, USA) or the mouse anti-GAD67 (1:500 dilutions, cat. no.sc-28376, Santa Cruz Biotechnology Inc., Texas, USA) antibody in combination with the rabbit anti-NeuN antibody (1:500 dilutions, cat. no. ab104225, Abcam Inc., MA, USA) for 120 min at 4 °C overnight. The negative control group was incubated with 0.01 M PBS. Then, sections were washed and incubated in the respective secondary antibody: goat anti-rabbit IgG® FITC (1:200 dilutions, cat. no. bs-0295G-FITC, Bioss Biotechnology, Beijing, China) or goat anti-mouse IgG®Cy3 (1:200 dilutions, cat. no. 115-166-003, Jackson Immuno Research Laboratories Inc., Baltimore, USA). The stained sections were examined with a Leica fluorescence microscope (Leica, DM5000B; Leica CTR5000; Leica, Germany). The Leica Application Suite Advanced Fluorescence (LAS AF, Leica Microsystems, Germany) software was used for quantification.
+ Open protocol
+ Expand
2

Measuring ROS in Guard Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
ROS production in guard cells was analysed using a chloromethyl derivative of 2′,7′-dichlorodihydrofluorescein diacetate (CM-H2DCFDA; Molecular Probes, Invitrogen) as previously described [4 (link)] with slight modifications. Seven-day-old WT and Atcuaoβ mutant seedlings were incubated for 3 h in the assay solution containing 5 mM KCl, 50 μM CaCl2 and 10 mM MES-Tris (pH 6.15), and then 10 μM CM-H2DCFDA was added to the sample. Seedlings were incubated for 30 min at room temperature and then the excess dye was washed out twice with the assay solution. After this period, the assay solution was replaced by liquid medium in the absence or presence of treatment performed as follows: 50 μM MeJA, 50 μM MeJA + 100 μM DMTU, 50 μM MeJA + 5 mM 2-BrEtA. Seedlings were incubated for 1 h. Images were acquired by Laser Scanning Confocal Microscopy (LSCM), using a Leica TCS-SP5 equipped with an Argon laser (Excitation/Emission: ~492–495/517–527 nm) and the Leica Application Suite Advanced Fluorescence (LAS-AF; Leica Microsystems, Wetzlar, Germany).
+ Open protocol
+ Expand
3

ROS Measurement in Arabidopsis Guard Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
ROS production in guard cells was analyzed using a chloromethyl derivative of 2′,7′-dichlorodihydrofluorescein diacetate (CM-H2DCFDA; Molecular Probes, Invitrogen) as previously described [25 (link),67 (link)], with slight modifications. Arabidopsis leaves from 12-day-old seedlings from WT, as well as AtCuAOδ insertional mutants and over-expressing lines grown on agar medium, were detached and incubated for 3 h in the assay solution containing 5 mM KCl, 50 μM CaCl2, and 10 mM MES-Tris (pH 6.15), and then 50 μM CM-H2DCFDA was added to the sample. Leaves were incubated for 30 min at room temperature and then the excess dye was washed out with the fresh assay solution. Collected tissues were again incubated in the assay solution containing 100 μM ABA for 20 min in dark conditions. Images were captured by Laser Scanning Confocal Microscopy (LSCM), using a Leica TCS-SP5 equipped with an Argon laser (Excitation/Emission: ~492–495/517–527 nm) and the Leica Application Suite Advanced Fluorescence (LAS-AF; Leica Microsystems, Milan, Italy).
+ Open protocol
+ Expand
4

Quantifying Blastocyst ROS Levels

Check if the same lab product or an alternative is used in the 5 most similar protocols
The level of ROS in blastocysts were determined using CellROX Green Reagent (Thermo Fisher Scientific, Waltham, MA), according to the manufacturer’s instructions. Blastocysts were simultaneously stained with Hoechst-33342 and CellROX Green Reagent to determine the total cell number and ROS content, respectively. The fluorescence intensity of CellROX reagent was measured by Leica Application Suite Advanced Fluorescence (LAS AF) with a Leica DMI 6000B microscope (Leica Microsystems, Wetzlar, Germany) and quantified using ImageJ (NIH, Bethesda, MD). We calculated the ROS content per blastomere by dividing the intensity of CellROX reagent by the total cell number of blastocysts.
+ Open protocol
+ Expand
5

H2O2 Imaging of Arabidopsis Root Stress Response

Check if the same lab product or an alternative is used in the 5 most similar protocols
The H2O2 imaging of root tissue was done by following the standard procedure adopted in a previous publication (Bose et al., 2014 ). The 4- to 5-day-old Arabidopsis seedlings were treated with 100mM NaCl in BSM background. At 4h and 24h after salt treatment, the roots were washed with 10mM Tris-HCl buffer and incubated in 25 µM 2′,7′-dichlorofluorescein diacetate (DCF-DA, D6883; Sigma) for 30min at 30 °C. Following DCF-DA incubation, the amount of H2O2 produced in roots was assessed by visualizing fluorescence intensity using a confocal microscope (Leica TCS SP5, Leica Microsystems). The Argon, visible laser power was set at 20%. Given that the H2O2 fluorescence intensity at 4h was stronger than at 24h time point, two different settings (and, hence, two different sets of controls) were used to resolve the signal. The acousto-optic tuneable filter (AOTF-488) was set at 10 % and 40 %, and the hybrid detector (HyD) gain was set at 19 and 120 for 4-h and 24-h time points, respectively. The software Leica Application Suite Advanced Fluorescence (LAS AF, Leica Microsystems) used to acquire images, and ImageJ (National Institutes of Health) was used to calculate the mean fluorescence intensity.
+ Open protocol
+ Expand
6

Multimodal Imaging of Cytoskeletal F-actin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dissociated cells were fixed in 3.7% formaldehyde / 0.25% glutaraldehyde in phosphate buffed saline (PBS) for 10 – 15 min. F-actin was visualized by incubating fixed cells for 1 – 2 h with BODIPY-FL-Phallacidin (2.5:1000) in PBST (0.1% Triton X). Following phallacidin staining, cells were dehydrated in isopropanol and cleared in Murray's clear (2:1 benzyl benzoate:benzyl alcohol). Single optical sections and Z-stacks of fixed samples were collected using a 63× 1.4 numerical aperture (NA) oil-immersion objective mounted on an inverted compound microscope (DMI6000, Leica Microsystems) equipped with a confocal laser scan head (SP5, Leica Microsystems) using Leica Application Suite Advanced Fluorescence (LASAF, Leica Microsystems) software. Maximum projections and reslicing of z-stacks were carried out with ImageJ (v. 1.38, Wayne Rasband, NIH). Three animal cap explants were subjected to confocal fluorescence imaging and the same explants were separately imaged with confocal Raman spectroscopy. For dissociated cells, at least 40 cells were imaged with confocal fluorescence imaging and then separately imaged with Raman spectroscopy.
+ Open protocol
+ Expand
7

Confocal Imaging of Biofilm Viability

Check if the same lab product or an alternative is used in the 5 most similar protocols
Two specimens for each group were analyzed using CLSM. After a 24 h incubation, the biofilm growing on the specimens was gently washed three times with PBS to remove non-adherent cells and stained using the FilmTracer live/dead Biofilm Viability Kit (Invitrogen, Carlsbad, California, USA). Biofilm was observed using a confocal laser scanning microscope (Leica TCS SP2; Leica Microsystems, Wetzlar, Germany). Three randomly selected image stack sections were recorded for each specimen. Confocal images were obtained using a dry 20× (NA 0.7) objective and digitalized using Leica Application Suite Advanced Fluorescence (LAS AF; Leica microsystems, Wetzlar, Germany), at a resolution of 1024 × 1024 pixels, with a zoom factor of 1.0. For each image stack section, 3D-rendering reconstructions were obtained using Drishti 3D software [23] .
+ Open protocol
+ Expand
8

Mesenchymal Stem Cell Encapsulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mesenchymal stem cells were encapsulated in ultrapure sodium alginate (Sigma-Aldrich, St. Louis, MO), using commercially available electrostatic encapsulator (B-390; Buchi Labortechnik AG, Flawil, Switzerland). The suspension containing 2 × 10 6 MSCs in 1 mL of 1% sodium alginate solution was loaded in the encapsulator cuvette. Encapsulation was performed using the following parameters: frequency of vibration-3000 Hz, voltage -2 kV, pressure-450-500 mBar and nozzle diameter-120 μm. Microencapsulated cells were sprayed in a solution containing 50 mmol/L CaCl 2 and 50 mmol/L BaCl 2 under continuous stirring. Encapsulated MSCs were incubated in the solution for 10 min, followed by washing in 0.9% saline. Prior to encapsulation, MSCs were stained with 4', 6-diamidino-2-phenylindole (Sigma-Aldrich, St. Louis, MO). The number of MSC per capsule was calculated by confocal fluorescence microscopy (Leica TCS SP5; Leica Microsystems, Wetzlar, Germany) at λ = 405 nm. Leica Application Suite Advanced Fluorescence (LAS AF; Leica Microsystems) software was used to analyse images.
+ Open protocol
+ Expand
9

Two-Photon Microscopy Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescent images using two-photon microscopy were acquired using a Leica TCS SP5 X confocal microscope equipped with a Leica HC PL APO 100x/1.40 Oil immersion objective. Illumination was provided by a Ti-Sapphire IR laser (Chameleon Ultra II). The cells were excited at 730 nm (two-photon) to acquire Hco fluorescence images at 420–500 nm emission wavelength. The imaging setup was controlled by the Leica Application Suite-Advanced Fluorescence (LAS AF). Images were processed using Imaris 9.3.0.
+ Open protocol
+ Expand
10

Caffeine Regulates DAF-16 Localization

Check if the same lab product or an alternative is used in the 5 most similar protocols
DAF-16::GFP animals (Is[daf-16P::daf-16::GFP; rol-6(su1006)]) were cultured at 20°C and imaged at L4 stage. Worms were exposed to caffeine for different periods of time (30 min, 1, 2 and 48 h). Worms were mounted on slides with an agarose pad and paralyzed with azide. Images were taken using a confocal microscope system (Leica TCS SP5) with Leica Application Suite Advanced Fluorescence (LAS AF). The relation between fluorescence signal in nucleus and cytoplasm was quantified using Image-J software (NIH). The average fluorescence from six different cells per worm were calculated and used for analyzes (Driver et al., 2013 (link)). Each experiment was repeated at least three times and 12–17 worms per group were randomly selected in each experiment.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!