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22 protocols using echo revolve microscope

1

Mitochondrial Imaging of Cellular Metabolic Effects

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MEFs were treated with fatty acids and BPA (16 h and 6 h) in Nunc Lab-Tek II Chamber Slides (ThermoFisher Scientific, Waltham, MA), followed by labeling with 300 nM Mitotracker Red (CMX ROS), a membrane potential-sensitive mitochondrial dye, for 30 minutes. Labeled cells were fixed in 10% formalin for 30 minutes, while being kept protected from light, and counterstained with DAPI to image nuclei. Cells were imaged at 600-fold magnification on an Echo Revolve microscope (Echo, San Diego, CA).
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2

Immunofluorescent Staining of HLA-C

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3D Sw71 models or 2D Sw71 monolayers were cultured for 24–48 h in sterile culture chambers on a glass slide (Falcon). Trophoblast derived explants were cultured in the same type of chambers for expansion of EVTs, and after that the explants were removed carefully. The cells were fixed in 2% paraformaldehyde (PFA) in PBS, overnight (ON) at RT and stained for HLA-C using indirect immunofluorescent method. After washing with PBS, the cells were incubated with 10% goat serum (to block the non-specific binding) and then subsequently with purified polyclonal rabbit anti-human HLA-C antibody (E-AB-17922, Elabscience) and AF488-conjugated goat anti-rabbit antibody (E-AB-1055, Elabscience). Negative controls were prepared by omitting primary antibody and/or secondary antibody. Control staining was done with mouse polyclonal anti-human HLA-G antibody (E-AB-18031, Elabscience) and goat anti-mouse IgG (E-AB-1015, Elabscience). The slides were imaged with ECHO Revolve microscope (RVL-100-M, Echo, San Diego, CA, USA).
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3

Immunohistochemical Analysis of Aortic Root

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Paraffin-embedded tissue underwent deparaffinization in xylene and hydrated gradually from ethanol to water. Slides were then subjected to antigen retrieval in tris buffer at 95 °C for 30 min before blocking, primary antibody application overnight at 4 °C, and secondary antibody treatment for 1 h at room temperature. DAPI nuclear stain and immunostaining were conducted with antibodies against αSMA (Abcam, Fremont, CA, USA) and CD45 (Invitrogen, Waltham, MA, USA). Images were taken using the ECHO Revolve microscope (ECHO, San Diego, CA, USA) and quantified using ImageJ version 1.53 [44 (link)]. For each sample, one low-powered field was captured from one 5 μm section at the level of the sinus of Valsalva. The entire area encompassing the aortic root from intima to adventitia was encircled, and the mean fluorescent intensity was quantified.
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4

Spleen and Lung Histopathology Analysis

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For spleen histology, spleen segments were stored in 10% formalin prior to being submitted at the BCM Pathology and Histology Core. Each spleen was parafilm embedded, sectioned, and hematoxylin and eosin (H&E) stained. For lung histology, lung lobes were isolated and inflated with 1 x PBS prior to being preserved in 10% formalin for processing. Images of spleen and lung histopathology were captured using a Leica Upright fluorescent microscope or an Echo Revolve microscope (San Diego, CA). Scale bars for each image were embedded using Image J or Evo technologies software, respectively. Granulomas visualized via H&E staining were counted following the stitching of 10x magnification images via Aivia technology and quantified using ImageJ.
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5

Blastocyst-Endometrial Attachment Modeling

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To mimic the blastocyst-endometrial epithelium contact during attachment we co-cultured differentiated Sw71 spheroids with a confluent monolayer of HEC-1A cells for 24 h. The workflow included: (1) growing of the HEC‐1A cells in monolayer (≥ 95% confluency, 10 000 cells/well for 7 days) in McCoy's 5A complete in 96 well flat-bottomed plate (Costar) and (2) differentiation of Sw71 spheroids in DMEM-F12 complete in ULA plate (Costar) and (3) co-culture for 24 h. The day before spheroid transfer medium was switched to half McCoy’s 5A complete—half medium of interest (hsDMEM/F12, lsDMEM/F12 or Opti-MEM), each condition in triplicate). On the next day differentiated Sw71 spheroids were placed on the top of each HEC-1A monolayered well (4 per well) with wide-bore tips. After imaging the spheroids were left to adhere for 30 min, 1, 2, 4 and 24 h. At each time point the attachment rate (attached vs. placed spheroids) was determined after 3 min (min) shake at 1000 rpm or at 3000 rpm. The force of the shake of 1000 rpm corresponds to ~ 17 Hz frequency, while 3000 rpm—to 50 Hz frequency. Images were taken at each time point with ECHO Revolve microscope (RVL-100-M, Echo, San Diego, CA, USA).
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6

Wound Scratch Assay for Cell Migration

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The wound scratch assay was employed to evaluate the migration rates of cells cultured at different temperatures. First, cells were divided into three equal parts and placed into three 6-well cell culture plates, supplemented with GM, and cultured at a 25 °C incubator until they reached full confluency. A sterile 200 μL pipette tip was used to create a uniform scratch wound on the monolayer of cells, and then the cell debris was removed by washing with PBS 3 times. The scratch cells were cultured in serum-free medium at 21 °C, 25 °C, and 28 °C. Images were captured at 0, 12, and 24 h with an Echo Revolve microscope (ECHO, Chicago, America), and the scratch closure rate was measured using ImageJ software (v2.1.0, Bethesda, MD, USA).
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7

Adipocyte and Crownlike Structure Quantification

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Adipocyte size was measured using five images per animal on the Echo Revolve Microscope at 10× magnification (San Diego, California, USA). The image was divided into quartiles and a random number generator was used to select the quartile for quantification. The area of the quartile was measured through area tracing and the number of adipocytes counted for the given area. The average adipocyte size was determined by dividing the total number of adipocytes within the quartile by the quartile area.
For CLS determination, tissues were processed, embedded and F4/80 stained. Images were taken at 10× magnification. The image was divided into quartiles and a random number generator was used to select the quartile for CLS and area quantification. The average CLS was determined by dividing the total number of CLS within the quartile by the quartile area.
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8

Analyzing Opsin Localization in Chaperone-Treated Cells

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Wildtype and T17M mutant opsin-expressing cells cultured as described above were induced with tetracycline in the presence of increasing concentrations of SRD005825, and 24 hours later SRD005825 was reapplied. One day later, cells were fixed in 4% paraformaldehyde in PBS and analyzed by confocal microscopy. Staining with 1D4 monoclonal antibody was used to detect rhodopsin. The plasma membrane was marked by fluorescently tagged wheat germ agglutinin (WGA). Images from 10 replicate wells per treatment were acquired using the Thermo CX7 HCS instrumentation (ThermoFisher) with a 40× objective. Automated quantitative analysis of relative opsin intensity was determined via colocalization analysis of opsin with the membrane fraction of WGA-Alexa Fluor 488 on the analysis suite of the CX7 HCS platform. High-resolution images were taken with a 100× objective on an Echo Revolve microscope (Echo, San Diego, CA). Fluorescence intensity of membrane-bound opsin in each chaperone treated sample was measured and the value compared to the value of treatment with dimethyl sulfoxide (DMSO).
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9

Aortic Elastin Quantification in Mice

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After animal sacrifice, mice were perfused with 10 cc of cold phosphate buffer saline through the left ventricle. The heart was transected across approximately the atrioventricular groove, and the ascending aorta, arch, and distal thoracic aorta were dissected from the mouse. The heart and aortic tissue were placed in 4% paraformaldehyde for 24 h at 4 °C and then transitioned to 70% ethanol. Fixed tissue was embedded in paraffin and sectioned at the aortic root for H + E, trichome, and elastin staining. Images were taken using the ECHO Revolve microscope (ECHO, San Diego, CA, USA). For elastin break quantification, four high power fields were captured from one 5 μm section across the aortic root at the level of the sinus of Valsalva. Elastin breaks were counted in each field within a 100 × 20 μm region of interest and averaged.
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10

Quantifying Cell Adhesion and Obstruction

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Images of immunostained catheters were obtained using the fluorescence ECHO-Revolve microscope (Echo). ImageJ (NIH image software) was used to quantify total cells as previously described [16 (link)], in areas of 0.45 mm2 for the cell adhesion assay and 0.071 mm2 for the catheter obstruction assay.
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