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18 protocols using ly294002 hydrochloride

1

Inhibition of PI3 Kinase and GSK3β Signaling

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LY294002 hydrochloride (Sigma-Aldrich, St. Louis, MO, USA), PI3 kinase inhibitor, was dissolved in 100% DMSO and small aliquots were stored at −80℃. Immediately before use, frozen aliquots were diluted to final working concentrations of 0.8 or 8.0 µg/µl in 80% DMSO. S9 peptide, which consists of 21 amino acids (a.a.) including a small peptide (11 a.a.), commonly referred to as protein transduction domain [19 (link)], and a portion (10 a.a.) of the N-terminus sequence of GSK3β (GRPRTTSFAE) known as the substrate site for Akt and thereby competes with GSK3β against its phosphorylation [20 (link)21 (link)], was artificially synthesized and kindly provided by Professor Soo Young Lee at the Center for Cell Signaling and Drug Discovery Research, Ewha Womans University (Seoul, Korea). It was dissolved to final working concentrations of 1.0 or 10.0 µg/µl in saline.
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2

Molecular Modulators of Cellular Pathways

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Chloroquine diphosphate salt, dl-sulforaphane (SFN), phorbol-12 myristate-13 acetate (PMA), N-acetyl-l-cysteine (NAC), Wortmannin, and LY294002 hydrochloride were purchased from Sigma-Aldrich (St. Louis, MO, USA). AKTi (AKT inhibitor VIII, Akt1/2) was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Poly (cytidylic-inosic) acid potassium salt (PolyI:C) and the PKR inhibitor CAS 608512-97-6 were purchase from Calbiochem-Millipore (Darmstadt, Germany). Human recombinant interferon-alpha 2b was obtained from Blausiegel (Cotia, SP, Brazil).
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3

Zebrafish Limb Regeneration Assay

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Zebrafish embryos were amputated as previously described (Hale & den Hertog, 2016); amputations were performed at 2 dpf for all experiments. Regeneration was allowed to proceed until analysis at 3 dpa or fixation at either 1 dpa or 2 dpa. LY294002 hydrochloride (Sigma) was administered directly following recovery of amputated embryos in E3 medium. Whole zebrafish embryos were lysed for genotyping or fixed in 4% paraformaldehyde (PFA), in phosphate‐buffered saline (PBS), either 3 hpa for in situ hybridization or at 1 dpa and 2 dpa for immunohistochemistry.
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4

In Vitro Neuronal Transfection and APRIL Signaling

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After 2 or 6 days in vitro, the neurons were transfected with expression vectors using lipofectamine 2000 (Invitrogen, Paisley, UK) according to the manufacturer's instructions with modifications. Briefly, 1.2 μg of DNA was mixed with 4 μl of lipofectamine. After 20 min, this mixture was added to the cultures. After 3 h, the cultures were then washed with culture medium, at which point recombinant human APRIL was added (R&D Systems, Abingdon, UK) and the neurons were maintained in culture for further 18 h. Chemical inhibitors (PD98059, Sigma-P215, LY294002 hydrochloride, Sigma-L9908 and Akt1/2 kinase inhibitor A6730, Sigma-Aldrich Company, Dorset, UK) were added 2 h before incubation of recombinant APRIL. Function-blocking antibodies (mouse anti-BCMA, MAB5931 and human anti-APRIL, MAB5860, R&D Systems, Abingdon, UK) were added after transfection.
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5

CX3CL1 and IL-6 Signaling Pathway Modulators

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Recombinant human CX3CL1 was obtained from Peprotech. Recombinant human IL-6 protein was obtained from R&D systems. Acriflavine (HIF-1 inhibitor), KN-93 (CaMKII inhibitor), GSK690693 (pan-Akt inhibitor), BAY 11-7082 (NF-κB signaling inhibitor), U73122 hydrate (pan-PLC inhibitor), Stattic (STAT3 inhibitor), LY-294002 hydrochloride (PI3K inhibitor), Sodium oxamate (LDHA inhibitor), pertussis toxin (PTx,Gαi/0 inhibitor), H-89 (PKA/ROCK inhibitor), Y-27632 (ROCK inhibitor) and CoCl2 were all obtained from Sigma-Aldrich. Rapamycin (mTORC1 inhibitor) was purchased from Cayman Chemical. 17-AAG (HSP90 inhibitor) and P6 (pan-JAK inhibitor), Bisindolylmaleimide I (PKC inhibitor) were purchased from Calbiochem. The Gαq-inhibitor UBO-QIC was purchased from the Institute of Pharmaceutical Biology, University of Bonn. Gallein (βγ-subunit inhibitor) was obtained from Tocris.
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6

Inhibition of Cellular Internalization Pathways

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PBLs, PBMCs, or tumor cell suspension obtained as previously described were incubated with LNCs at the final DiD concentration of 50 ng/ml for 90′, 3 h, or overnight at 37 °C. As control, Blank-LNC formulations were used. 10 µg/ml Cytochalasin B (Sigma-Aldrich), 100 µg/ml Colchicine (Sigma-Aldrich), 50 µM LY294002 hydrochloride (Sigma-Aldrich), 100 nM Wortmannin (Sigma-Aldrich), and 100 U/ml Nystatin were used to test the mechanism of internalization. At the end of the incubation, cells were stained for flow cytometry analysis. Further details are reported in Additional file 1: Supplementary methods.
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7

Probing Cellular Signaling Pathways

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Primary antibodies used in this work were β-actin (Abcam, ab8226), SNAI1 EC3 (ref20 (link).), PY99 (Santa Cruz, sc7020), PDGFR-β (Cell Signaling, 3169), ERK1/2 (Cell Signaling, 9102), p-ERK1/2 (Cell Signaling, 9109), Akt (Cell Signaling, 4691), p-Akt (Cell Signaling, 4060), FAK (Cell Signaling, 3285), p-FAK (Cell Signaling, 3281), VE-Cadherin (Abcam, ab33168), VCAM-1 (Abcam, ab98954), MMP-9 (Abcam, ab38898), Snail (ref20 (link).), MT1-MMP (Abcam, ab51074), CD31/PCAM-1 (1:10, SC-506) Fibronectin (DAKO, A0245), Beta 1 integrin (Cell Signaling, 34971 S), Beta 3 integrin (Cell signaling, 13166 S), NF-KB p65 (Cell signaling, 8242 S), Phospho-NF-KBp65 (Cell signaling 3033 S) and Collagen I (Abcam, ab34710). Secondary antibodies used were anti-Mouse or anti-Rabbit IgG Antibody DyLight™ 680 or 800 Conjugate.
Other compounds used were PDGF-BB (Peprotech, 100-14B), BAPN: 3-Aminopropionitrile fumarate salt (Sigma, A3134), FAK inhibitor, PF-573228 (PZ0117, Sigma), ERK inhibitor, U0126-monoethanolate (Sigma, U120) and PI3K/Akt inhibitor LY294002 hydrochloride (Sigma, L9908).
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8

Evaluating Psychoactive Drugs and PI3K Inhibitor

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Aripiprazole, sertindole, and ketamine were purchased from Chemipharm Pharmaceutical Industries (Sixth October City, Egypt), H. Lundbeck A/S (Copenhagen, Denmark), and Trokiaa Pharmaceuticals Ltd. (Ahmedabad, India), respectively. Aripiprazole and sertindole were dissolved in a minimum amount of 0.1-M hydrochloric acid and diluted with saline, and then administered (1 ml/200 g of body weight) orally (p.o.). Ketamine was diluted in normal saline and administered (0.1 ml/200 g of body weight) intraperitoneally (i.p.). PI3K inhibitor, LY294002 hydrochloride, was purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA) and dissolved it in 1% DMSO. All other chemicals were of the highest commercially available purity grade.
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9

Insulin and Glucagon Regulation Assay

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GLP1 was obtained from Novo Nordisk A/S (Bagsvaerd, Denmark). Insulin and the C-peptide assay (enzyme-linked immunosorbent assay (ELISA)) kit were from Mercodia (Uppsala, Sweden). The anti-insulin mouse monoclonal antibody (SAB4200691) and anti-forkhead box O 1 (FOXO1) antibody (AV32107) were from Sigma-Aldrich. The anti-glucagon antibody (2760S) was from CST Biological Reagents Company Limited (Shanghai, China). The anti-mast cell function-associated antigen B (MAFB) antibody (DF8895) and anti-PDX1 antibody (DF7170) were from Affinity Biosciences (Cincinnati, OH, USA). The anti-neurogenin 3 (NGN3) antibody (GTX60254) was from GeneTex Inc. (Irvine, CA, USA). The primary antibodies against MAFA (sc-390491), pan-Cytokeratin (sc-8018), AKT1/2/3 (sc-81434), exendin (9-39) (SC-364387), and amylase were from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). The PI3K inhibitor LY294002 hydrochloride was also from Sigma-Aldrich.
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10

Small Molecule Inhibitor Sourcing

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Rapamycin (sirolimus, molar mass 914.172 g/mol), everolimus (molar mass 958.224 g/mol), LY-294002 hydrochloride, PP242 hydrate and mitomycin were purchased from Sigma-Aldrich, Seelze, Germany.
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