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5 protocols using anti mouse secondary antibodies

1

PDCD4 Expression Assay Protocol

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DMEM low glucose (Cat No E15-806), DMEM-F12K (Cat No E15-012), foetal calf serum (FCS)(Cat No A15-104) and trypsin (Cat No L11-659) were purchased from PAA Laboratories, UK.
Antibodies to Programmed Cell Death Gene 4 (PDCD4) (Cat No ab51495), β-actin (Cat No ab8226), Lamin B1 (Cat No ab8226), HIF1-alpha (Cat No ab51608) and FITC conjugated anti-rabbit secondary antibodies (Cat No ab6717) were purchased from AbCam, UK. HRP-conjugated anti-rabbit (Cat No A0545), anti-mouse secondary antibodies (Cat No A5278), goat serum (Cat No G9023) and all laboratory chemicals and reagents were purchased from Sigma, UK unless otherwise stated.
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2

Protein Quantification via Western Blot

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Proteins were resuspended in 1:1 protein solving buffer and tris(2-carboxyethyl) phosphine-reducing agent (PSB-TCEP, Macherey-Nagel), sonicated, and denatured for 5 min at 95 °C. Either 5 µg (ENS culture) or 20 µg (colon) of proteins were separated using NuPAGETM 4–12% Bis-Tris gels (Life Technologies) and transferred to nitrocellulose membranes (Life Technologies). Membranes were incubated overnight at 4 °C with the primary antibodies (listed in Additional File 2 Table S2) Then, with HRP-conjugated anti-rabbit (Life technologies, 1:5000) or anti-mouse secondary antibodies (Sigma, 1:5000) and Clarity Western ECL Substrate (Bio-Rad, Marnes-La-Coquette, France) chemiluminescence of blots was imaged using a laser-scanning densitometry ChemiDoc MP Imaging System (Bio-Rad). Western blot data are expressed as relative values to β-actin normalized to the control mean. Contrasts of the illustrative Western blot have been adjusted with ImageLab software v6 (Bio-Rad).
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3

Western Blot Protein Analysis

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Denatured protein samples were loaded on pre-cast 4–12% SDS-PAGE gels (Invitrogen, WG1402) and resolved for 1.5 h at 160 V in SDS-MOPS buffer (Invitrogen, NP0001). Proteins were transferred to PVDF membranes (Bio-Rad Laboratories, 1620177) with wet transfer using tris-glycine buffer supplemented with 10% fresh methanol. Membranes were blocked in 5% milk (Lab Scientific, M0841) prepared in PBST (0.05% Tween 20) and incubated with corresponding antibodies described in key resources table. Membranes were washed three times with PBST for 5 min each before incubation with anti-mouse secondary antibodies (Sigma-Aldrich, F1804) for at least 60 min, and then washed again before development using horseradish peroxidase substrate (Millipore, WBKLS0) and visualized using a Chemidoc MP imaging system (Bio-Rad Laboratories).
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4

Genistein's Effect on Huntingtin Protein

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Genistein (99% purity; #446-72-0), purchased from Pharmaceutical Research Institute in Warsaw (Poland), was diluted in DMSO at stock concentrations of 30, 60, and 100 mM and stored at − 20 °C. Plasmid pEGFP (encoding EGFP) was from Addgene (#6077-1), as were plasmids pEGFP-Q74 (encoding EGFP protein fused to a fragment of huntingtin corresponding to the exon 1 with 74 CAG repeats; c.54GCA[74]; Addgene; #40262) and pEGFP-Q23 (encoding EGFP protein fused to a fragment of huntingtin corresponding to the exon 1 with 23 CAG repeats; c.54GCA[23]; Addgene; #40263) (these plasmids were gifts from Dr. David Rubinsztein to Addgene). Antibodies against GFP (used at dilution 1:4000) were from Santa Cruz Biotechnology (#sc-9996), and those against LC3 (used at dilution 1:2000) from MBL International (#PM036). The anti-mouse secondary antibodies (used at dilution 1:4000), as well as anti-β-actin antibodies (used at dilution 1:25,000) conjugated with HRP (#A3854), were from Sigma-Aldrich. Lysotracker Red was purchased from Life Technologies (#L-7528). Muse® Annexin V and Dead Cell Assay Kit were purchased from Merck (#MCH100105).
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5

Protein Extraction and Western Blot Analysis

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Firstly, the protein was extracted by 1×EBC lysate and 2xSDS, and the protein expression level was analyzed by Western Blot: 10 μl denatured protein samples were added to each well, electrophoresis with 10% SDS-PAGE, and protein separation completely was performed with 1 x running buffer at 100 V (28 (link)–30 (link)). The protein was transferred to the PVDF membrane at 100V for about 90 min. Then sealed the PVDF membrane at room temperature with 5% milk for 2h, and incubated the primary antibody with 2% milk at 4°C overnight. Primary antibodies included CTSL antibody (1:10000, Abcam Catalog No. ab200738), β-actin antibody (1:5000 Cell Signaling Technology), and HSP70 antibody (1:2000 Sigma USA). On the second day, PVDF (polyvinylidene fluoride) membrane was washed three times with 1×TBST, and the secondary antibody was incubated at room temperature for 1-2h. The secondary antibodies included anti-rabbit secondary antibodies (1:2000) and anti-mouse secondary antibodies (1:2000) which were purchased from Sigma (USA). The PVDF membrane was then cleaned with TBST. An imaging scanner was used to detect the strength of each cell membrane strip after TBST washing three times. Each experiment was repeated three times.
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