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10 protocols using p shp2

1

Nuclear Protein Extraction and Western Blot Protocol

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Nuclear protein was extracted according to the manufacturer's instruction of the nuclear and cytoplasmic protein extraction kit (Beyotime). The protocol for western blot has been described in detail in our previous publication.56 (link) Primary antibodies were used as follows: antibodies against SHP-1 and SHP-2 (Epitomics, Burlingame, CA, USA); STAT3, p-STAT3 (Tyr705), p-STAT3 (Ser727), p-p44/42 Erk1/2 (Thr202/Tyr204), cyclin D1, cyclin E1, survivin, p-SHP-2 (Tyr580), p-SHP-2 (Tyr542) and Histon H3 (Cell Signaling Technology); antibody against Ki67 (BD Bioscience); antibodies against TC-PTP, SHP-2, Mcl-1 (Proteintech, Wuhan, Hubei, China); GAPDH (Beyotime).
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2

Enzyme-linked Immunosorbent Assay Protocols

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Keratinocyte-derived chemokine (KC) and macrophage inflammatory protein-2 (MIP-2) antibodies for ELISA assays were purchased from R&D Systems, Minneapolis, MN. Mouse IL-6, IL-10, tumor necrosis factor-α (TNF-α), monocyte chemoattractant protein (MCP-1), MIP-2 and IL-17A ELISA kits were purchased from BD Bioscience, San Diego, CA. Antibodies for phosphorylated (p)-SHP-1, SHP-1, p-SHP-2, SHP-2, p-Akt and Akt were purchased from Cell Signaling Technology (Danvers, MA). Antibody for beta-actin was purchased from Abcam Company (Cambridge, MA). All other chemicals were of analytical reagent grade and purchased from Sigma Chemical, St Louis, MO.
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3

Molecular Mechanisms of PHPS1-Mediated Regulation

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Phenylhydrazonopyrazolone sulfonate 1 (PHPS1) was obtained from Sigma-Aldrich (St. Louis, MO). SB-3CT was obtained from Selleckchem (Houston, TX). RPMI 1640, FBS, penicillin, and streptomycin were obtained from HyClone (Logan, UT). TRIzol reagents were purchased from Takara Bio, Dalian, China. All PCR primers were purchased from Shanghai Bioengineering (Shanghai, China). ERK, p-ERK, Shp2, p-Shp2, Smad2, p-Smad2, Smad3, p-Smad3, JNK, P-JNK, P38, p-P38, MMP-9, MMP-2, E-cadherin, vimentin, α-SMA and β-actin primary antibody were from Cell Signaling Technology (Danvers, MA), and Shp2 primary antibody was from Santa Cruz Biotechnology (Santa Cruz, CA). MMP-9 and TGF-β1 ELISA kits were from Boster (Wuhang, China). Lipofectamine LTX was from Invitrogen (Carlsbad, CA).
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4

Western Blot Analysis of Signaling Proteins

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Cell lysates (100 μg samples) were prepared by Transmembrane Protein Extraction Reagent (FIVEphoton Biochemicals, TmPER-200) or RIPA buffer, and were separated by electrophoresis on 4-15% SDS-polyacrylamide gels, and the proteins were electroblotted onto a nitrocellulose membrane. The membrane was probed with indicated primary antibody for 1 h at room temperature and then incubated with horseradish peroxidase-conjugated secondary antibody, which was detected with the Luminata Crescendo Western HRP Substrate (Millipore). The antibody used in this paper included: surfactant protein D (ab17781), SHP-1 (ab2020, 1:2000 dilution), CAMK1 (ab68234, 1:2000 dilution), mLAIR1 (ab171239, 1:500 dilution), CAMKIV (ab3557, 1:4000 dilution), CREB (ab5803, 1:2000 dilution), p-SHP-1 (Y536, ab51171, 1:1000 dilution) from Abcam; SHP-2 (3397s, 1:1000 dilution), p-SHP2 (Tyr580, 3703, 1:1000 dilution), p-CREB (S133, 9198, 1:2000 dilution) from cell signaling; anti-Flag M2 (F1804, sigma, 1:10000 dilution), actin (A5228, 1:10000 dilution) and human LAIR1 (LS-C44463, lifespan biosciences, 1:2000 dilution). A representative image was shown from at least 3 similar images.
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5

Comprehensive Western Blotting Antibody Panel

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Primary antibodies used for Western blotting were as follows: p-Tyr (sc-508), GAPDH (sc-32233), SHP2 (sc-7384), MCL-1 (sc-819) from Santa Cruz Biotechnology; p-EGFR (1068) (3777), p-ErbB2 (1248) (2247), ErbB3 (4754), p-ErbB3 (1289) (4791), p-ErbB3 (1328) (14525), p-ErbB4 (1284) (4757), p-Akt (308) (4056), p-Akt (473) (4060), p-Erk (202/204) (4370), p-P70S6K (389) (9205), p-4EBP1 (37/46) (2855), BIM (2933), BCL-xL (2764), p-P90RSK (380) (9341), p-S6 (235/6) (4858), p-S6 (240/4) (5364), c-Myc (5605), p-SHP2 (542) (3751), GAB1 (3232), p-GAB1 (627) (3233), p-GAB1 (659) (12745), β-ACTIN (4970), from Cell Signaling Technology. Secondary antibodies used were mouse IgG (GE Healthcare Life Sciences; NXA931) and rabbit IgG (GE Healthcare Life Sciences; NA934). Alpelisib and trametinib were purchased from AbMole Biosciences. RMC-4550 was purchased from Selleckchem. The SHP2 inhibitor (SHP099) for cell culture and in vivo experiments was purchased from MedchemExpress and AbMole Biosciences and was dissolved in DMSO at a stock concentration of 10 mmol/L for in vitro experiments. Human recombinant growth factors epiregulin (EREG) was purchased from Sigma-Aldrich (SRP3033) and neuregulin-1 (5898-NR) was purchased from R&D Systems.
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6

Signaling Pathway Protein Analysis

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Proteinase, saline, dimethyl sulphoxide (DMSO), and MG132 were purchased from Sigma-Aldrich. Poly(I:C), mainly consisting of low molecular weight species (100b–500b > 90%), and LPS was purchased from Sigma-Aldrich. HGF recombinant human protein was purchased from Thermo Fisher Scientific (Waltham, MA). SHP099 was purchased from Cayman Chemical (Ann Arbor, MI). Primary antibodies to RIG-I (#3743), MDA5 (#5321), p-IRF3 (#83611), IRF3 (#4302), p-MET (Tyr1234/1235) (#3077), p-MET (Tyr1349) (#3121), MET (#3127), p-GAB1 (#12745), GAB1 (#3232), p-SHP2 (#5431), SHP2 (#3397), p-ERK (#9101), ERK1/2 (#9102), DC-SIGN (#13193), DYKDDDDK Tag (FLAG) (#14793), Myc (#2276), GAPDH (#2118) and β-actin (ACTB; #4970) were purchased from Cell Signaling Technology (Beverly, MA); phosphotyrosine (05-321) and K48-ubiquitin (05-1307) were from Merck Millipore (Burlington, MA); PRL-1 (PTP4A1) (ab168643) and LECT2 (ab119429) were from Abcam (Cambridge, UK); and p-MET (Tyr1356) (PA5-40218) was from Thermo Fisher Scientific. All antibodies were used at a 1:1000 dilution.
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7

Comprehensive Western Blot Analysis Workflow

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Western blotting was performed as described previously [50 (link)]. The antibodies used in this study included the following: mouse monoclonal antibodies against β-actin (1:1000), gp130 (1:500) from Santa Cruz Biotechnology, E-cadherin (1:3000) from BD Biosciences (San Jose, CA, USA), rabbit monoclonal antibodies against SHP2 (1:1000) from Santa Cruz Biotechnology, N-cadherin (1:1000), Vimentin (1:1000), Erk1/2 (1:1000), p-Erk (1:1000), and p-SHP2 (1:500) from Cell Signaling Technology. All primary antibodies were diluted with 5% BSA in tris buffered saline tween-20 (TBST), and the membranes were incubated at 4 °C overnight. The membranes were washed with TBST three times and then incubated with HRP-linked secondary antibodies (Santa Cruz, CA, USA) for 1 h, at room temperature. All Western blots were detected by electrochemiluminescence (Amersham Pharmacia Biotech, Aylesbury, UK). β-actin was used as the internal control.
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8

Signaling Pathway Protein Analysis

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Proteins were extracted from mouse ovaries or cells by protein lysate containing 10 µg/ml protease inhibitor and 10 µg/ml phosphatase inhibitor. Then, western blotting assays were performed as previously described. Immunoblotting was performed with primary antibodies against AKT (Santa Cruz Biotechnology, sc-8312), p-AKT (Cell Signaling Technology, #4060), Caspase-3 (Santa Cruz Biotechnology, sc-56053), cleaved Caspase-3 (Cell Signaling Technology, #9661), Bax (Cell Signaling Technology, #2772), Bcl-2 (Cell Signaling Technology, #2876), p-SHP2 (Cell Signaling Technology, #5431), SHP2 (Santa Cruz Biotechnology, sc-280), p85 (Cell Signaling Technology, #4292), and Cyclin D2 (Abcam, ab3087). β-Tubulin (Proteintech, 66240-1-Ig) was used as a control. The grayscale of the western blotting bands was quantified by ImageJ (NIH).
For co-immunoprecipitation analysis, proteins were extracted as described above. After centrifugation at 12000× g for 15 min at 4°C, the supernatants were co-incubated with SHP2 antibody at 4°C overnight followed by incubation with protein A/G agarose beads for another 4 h according to the manufacturer's protocols.
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9

Western Blot Analysis of Signaling Proteins

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Cell lysates (100 μg samples) were prepared by Transmembrane Protein Extraction Reagent (FIVEphoton Biochemicals, TmPER-200) or RIPA buffer, and were separated by electrophoresis on 4-15% SDS-polyacrylamide gels, and the proteins were electroblotted onto a nitrocellulose membrane. The membrane was probed with indicated primary antibody for 1 h at room temperature and then incubated with horseradish peroxidase-conjugated secondary antibody, which was detected with the Luminata Crescendo Western HRP Substrate (Millipore). The antibody used in this paper included: surfactant protein D (ab17781), SHP-1 (ab2020, 1:2000 dilution), CAMK1 (ab68234, 1:2000 dilution), mLAIR1 (ab171239, 1:500 dilution), CAMKIV (ab3557, 1:4000 dilution), CREB (ab5803, 1:2000 dilution), p-SHP-1 (Y536, ab51171, 1:1000 dilution) from Abcam; SHP-2 (3397s, 1:1000 dilution), p-SHP2 (Tyr580, 3703, 1:1000 dilution), p-CREB (S133, 9198, 1:2000 dilution) from cell signaling; anti-Flag M2 (F1804, sigma, 1:10000 dilution), actin (A5228, 1:10000 dilution) and human LAIR1 (LS-C44463, lifespan biosciences, 1:2000 dilution). A representative image was shown from at least 3 similar images.
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10

Western Blot Analysis of Signaling Pathways

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For WB analysis, A549 and HCC827 cells were incubated with ZWB90-3 (3 µM and 0.3 µM, respectively) or Emi-IgG4 (1.5 µM and 0.15 µM, respectively) for 72 h. Whole-cell lysates were prepared in radio-immunoprecipitation assay (RIPA) buffer (NCM, Suzhou, China) with a 1% protease and phosphatase inhibitors cocktail (NCM, Suzhou, China). Protein concentrations of cell lysates were quantified using a bicinchoninic acid protein (BCA) assay kit (Tiangen, China). The antibodies for c-MET, phospho(p)-c-MET, Gab1, p-Gab1, AKT, p-AKT, SHP2, p-SHP2, ERK1/2, p-ERK1/2, RAS, GAPDH, and β-actin were obtained from Cell Signaling Technology (CST, MA, USA), and the anti-α-tubulin antibody was purchased from Santa Cruz Biotechnology (CA, USA). Enhanced chemiluminescence (ECL) detection reagents (NCM, Suzhou, China) were used to develop the protein signals (Clinx Science Instruments, Shanghai, China).
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