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10 protocols using streptavidin pe texas red

1

Multicolor Flow Cytometry for Immune Cell Profiling

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Cells (3×105–5×105/well) were fist incubated in FcBlock (BD Pharmingen) and then with cocktails of antibodies using CD45-APCCy7 (BD Pharmingen, 30-F11), F4/80-PECy5 (eBioscience, BM8), CD11b-AlexaFluor700 (BD Pharmingen, M1/70), MHCII-biotin (eBiosciences, M5/114.15.2) followed by streptavidin-PETexasRed (BD Pharmingen), CD64-PE (BD Pharmingen, X54-5/7.1.1), CX3CR1-unconjugated (AbD Serotec, polyclonal) followed by anti-IgG(H+L)-FITC (Southern Biotech), and anti-IL10-APC (eBiosciences, JES5-16E3), CD3-PECy5 (eBiosciences, 145-2C11), CD4-PECy7 (eBiosciences, GK1.5), CD19-PE (eBiosciences, MB19-1), FoxP3-PE (eBiosciences, FJK-16s), and PD1-PE (eBiosciences, J43). For intracellular staining, cells were fixed and permeabilized with Cytofix-Cytoperm solution (eBiosciences). Flow results were computed with a BD LSR II flow cytometer and data analyses was performed by using the FACS Diva software (BD).
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2

Multiparametric Flow Cytometry Profiling

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Staining was performed using rat anti-mouse biotinylated or fluorochrome-conjugated antibodies specific for Ter119 (Ly-76), Gr1 (Ly6G and Ly6C), Mac1 (CD11b), B220 (CD45R), CD4, CD8, CD41, CD34, CD16/32, Sca1 (Ly6A/E), cKit (CD117) and CD150 (Biolegend) and IL-7 receptor α (IL7Rα), CD48, CD105, and CD9 (eBioscience). Secondary staining used streptavidin PE-Texas-Red (BD Pharmingen). Cells were analyzed using a LSR Fortessa flow cytometer (Becton Dickinson), or cells were sorted using a FACSAria II (Becton Dickinson) flow cytometer after antibody staining with lineage depletion.
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3

Immunophenotyping of Murine Hematopoietic Cells

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Single cell suspensions were prepared as previously described 15 (link), and contaminating erythrocytes were lysed using ammonium chloride buffer where appropriate. Cell suspensions were stained with optimal dilutions of antibodies directly conjugated to either Biotin, FITC, PE, PE-Texas Red, PE-Cy5.5, PerCP-Cy5.5, PerCP-eFluor710, PE-Cy7, Pacific Blue, eFluor 450, allophycocyanin, Alexa Fluor 647, or allophycocyanin-eFluor 780. Biotinylated antibodies were visualized using streptavidin PE-Texas Red (BD Bioscience). Lineage positive cells were gated out of whole BM suspensions using mouse hematopoietic lineage eFluor450 cocktail (eBioscience).The following specific antibodies were used to detect cell surface antigens: CD117/c-Kit (2B8), Sca-1/Ly6A/E (D7), CD127/IL-7Rα (A7R34), CD34 (RAM34), CD135/Flt3 (A2F10), CD25 (PC61.5), AA4.1 (AA4.1), CD27 (LG.7F9), CD150 (mShad150), CD48 (HM48-1), CD244.2 (eBio244F4), CD45.1 (A20), CD45.2 (104), GR-1/Ly-6G (RB6-8C5), CD11b (M1/70), CD11c (N418), CD45R/B220 (RA3-6B2), CD19 (eBio1D3), CD3 (145-2C11), CD4 (GK1.5), and CD8 (53-6.7). All antibodies were obtained from eBioscience. The CD1d PBS-57 tetramer was obtained from the NIH Tetramer Core Facility (Emory University, Atlanta, USA).
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4

Comprehensive Immune Cell Profiling

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The following antibodies were used: CD4-AlexaFluor 700, CXCR5-Biotin, ICOS-PECy7, Bcl-6-AlexaFluor 647, CD27-APCH7, CD45RA-PE, CD19-APC or V450, IgD-FITC, IL-21-AlexaFluor 647, IFN-γ-PECy7, IL-10-PE, Streptavidin-PE-TexasRed (BD Biosciences), CD38-PerCPeFluor710, IL-6-FITC, (Biolegend). Neutralizing antibodies specific for human IL-6 and IL-21R and isotype controls from R&D Systems.
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5

Multiparameter Flow Cytometry Analysis

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Red blood cells were lysed with RBC lysis buffer (Invitrogen) and isolated splenocytes were stained with Live/Dead Aqua (ThermoFisher), or Fixable Viability Dye eF780 (ThermoFisher) for 20 min at 4°C in the absence of FBS, to differentiate live and dead cells. Cells were subsequently stained for surface markers (Supplemental table 1) in the presence of Fc block (αCD16/32, BioLegend) and 2% FBS. Cells expressing NP-specific BCRs were detected by staining with NP-PE (BioSearch). HEL peptide-loaded MHC II was detected using a mAb clone C3H4 (16 (link)) (kindly provided by Dr. Ron Germain, NIAID, Bethesda, MD), which was biotinylated and detected using streptavidin-PE-TexasRed (BD). After washing, cells were fixed in 1% paraformaldehyde (PFA) and stored at 4°C until analysis. Cells were analyzed on an LSRII flow cytometer (BD) and data were analyzed using FlowJo (v.10, Tree Star). See Figure 1A for gating strategies.
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6

Monoclonal Antibody Immunology Profiling

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Monoclonal antibodies purchased from commercial sources are listed in Supplementary Table 1. Anti-mouse PDL-2, anti-mouse B7x, anti-mouse B7h and anti-mouse B7H3 antibodies were kindly provided by Xingxing Zang (Albert Einstein College of Medicine, Bronx, NY). A cocktail of antibodies against the lineage markers [CD5, CD45R (B220), CD11b, Gr-1 (Ly-6G/C), 7–4, and Ter-119 antibodies] was purchased from Miltenyi Biotec (San Diego, CA). Streptavidin-PE-Texas Red was from BD Biosciences (San Jose, CA). Foxp3/Transcription Factor Staining Buffer Set was from eBioscience (San Diego, CA). LTβR-Ig fusion protein was kindly provided by Biogen Idec MA Inc. (Cambridge, MA). Calcipotriol ointment was purchased from a local pharmacy.
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7

Monoclonal Antibody Immunology Profiling

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Monoclonal antibodies purchased from commercial sources are listed in Supplementary Table 1. Anti-mouse PDL-2, anti-mouse B7x, anti-mouse B7h and anti-mouse B7H3 antibodies were kindly provided by Xingxing Zang (Albert Einstein College of Medicine, Bronx, NY). A cocktail of antibodies against the lineage markers [CD5, CD45R (B220), CD11b, Gr-1 (Ly-6G/C), 7–4, and Ter-119 antibodies] was purchased from Miltenyi Biotec (San Diego, CA). Streptavidin-PE-Texas Red was from BD Biosciences (San Jose, CA). Foxp3/Transcription Factor Staining Buffer Set was from eBioscience (San Diego, CA). LTβR-Ig fusion protein was kindly provided by Biogen Idec MA Inc. (Cambridge, MA). Calcipotriol ointment was purchased from a local pharmacy.
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8

Fetal Blood Cell Staining and Imaging

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Fetal blood samples were stained with Hoechst 33342 (Molecular Probes, Eugene, OR) and MitoTracker Deep Red (Invitrogen) according to manufacturer directions. Cells were then blocked and stained in 5% rat whole serum (Invitrogen) prepared in PB2 (Dulbecco PBS and 0.1% glucose [Invitrogen] and 0.3% BSA [Gemini BioProducts]) with 1:200 dilutions of PE-CD71, Biotin-Ter119 (eBioscience, San Diego, CA), and 2 μg/mL of thiazole orange (Sigma-Aldrich). After washing, cells were stained with 1:250 PE-Texas Red streptavidin (BD Biosciences, San Jose, CA). Data were collected on the ImageStreamX and analyzed using IDEAS 6.2 (Luminex, Austin, TX); debris, calibration beads, and cell aggregates were excluded by gating on size and aspect ratios, and focused cells were selected based on sharpness of the brightfield stain (gradient root mean square) as previously described.25 (link)
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9

Identification and Enumeration of Murine Blood and Peritoneal Immune Cells

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We used flow cytometry to identify and enumerate blood basophils (CD49b+; IgE+), eosinophils (Siglec-F+; SSChigh), monocytes (Siglec-F; CD11b+; Gr-1low) and neutrophils (Siglec-F; CD11b+; Gr-1high), as well as peritoneal MCs (c-KIT+; IgE+). Briefly, blood cells were lysed by treatment with ACK buffer 2 times for 5 min. Cells were blocked with unconjugated anti–CD16/CD32 antibodies on ice for 5 min and then stained with a combination of the following antibodies on ice for 30 min: for blood leukocytes analysis, Siglec-F-PE (E50-2440; BD Biosciences), CD11b-eFluor450 (M1/70; eBioscience), CD49b-APC (DX5; eBioscience), IgE-biotin (23G3; eBioscience), and Gr-1-FITC (RB6-8C5; eBioscience). For peritoneal MCs, c-KIT-APC (ACK2; eBioscience), IgE-biotin (23G3; eBioscience). Cells were then incubated for 15 min with PE-Texas Red Streptavidin (BD Pharmingen). Data were acquired on LSRII and Accuri C6 (BD Biosciences) flow cytometers and analyzed with FlowJo software (TreeStar).
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10

Multi-Color Flow Cytometry Analysis

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Spleen cells were first incubated with anti-murine Fcγ receptor II/III mAb, 2.4G2 for 10 min and then stained with saturating concentrations of Alexa Fluor 488-conjugated, APC-conjugated, biotin-conjugated, PE-conjugated, FITC-conjugated, PerCPCy5.5-conjugated, Alexa Fluor 647-conjugated and Pacific Blue-conjugated mAb against CD3, CD4, CD8, CD19, B220, H2-Kb, I-Ab, H-2Kd, and I-Ad, purchased from either BD Biosciences (San Jose, CA), BioLegend (San Diego, CA), eBioscience (San Diego, CA), or Invitrogen (Carlsbad, CA). Biotinylated primary mAb were detected using PE-Texas Red-streptavidin (BD Biosciences, San Jose, CA). Cells were fixed in 1% paraformaldehyde before reading.
Multi-color flow cytometric analyses were performed using a BD LSRII flow cytometer (BD Biosciences, San Jose, CA). Gating strategies: lymphocytes were gated by forward and side scatter and fluorescence data were collected for a minimum of 10,000 gated cells. Studies of donor T cells were performed on a minimum of 5,000 cells collected using a lymphocyte gate that was positive for CD4 or CD8 and either positive (host origin) or negative (donor origin) for MHC class I of the uninjected parent e.g. for B6→F1 mice donor cells are H-2Kd negative. B cells were gated as positive for B220 and either positive (host origin) or negative (donor origin) for MHC Class II of the uninjected parent.
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