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30 protocols using mg132 hy 13259

1

Isolation and Identification of PBA from I. pubescens

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PBA was isolated from I. pubescens and identified by Dr. Peng Wu from Guangzhou University of Chinese Medicine. Antibodies against Keap1 (10503-2-AP) was purchased from Proteintech Group, Inc. (Chicago, IL, USA). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH, E12-052), HO-1 (E1A5393), NQO1 (E2A6437), cullin-3 (Cul3, E2A7225V), Flag (E1T508-2) and β-actin (E12-051) antibodies were purchased from Enogene Company (Nanjing, Jiangsu, China). Ubiquitin (Ub, sc-8017), caspase-1 (sc-56036), caspase-1 p20 (sc-398715) and interleukin-1 beta (IL-1β, sc-52012) antibodies were bought from Santa Cruz Biotechnology (Santa Cruz CA, USA). Nrf2 (12721) and lamin B1 (13435) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Nrf2 antibody (ab137550) for immunofluorescence staining was purchased from Abcam (Cambridge, UK). NLPR3 (NBP-2-12446) antibody was purchased from Novus Biologicals, LLC (Centennial, CO, USA). MG-132 (HY-13259) and tBHQ (HY-100489) were purchased from MedChemExpress (Monmouth Junction, NJ, USA).
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2

Cultivation and Characterization of Bladder Cancer Cell Lines

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The BLCA cell lines (T24 and 5637) were purchased from the Cell Bank of Type Culture Collection of Chinese Academy of Sciences (Shanghai, China), confirmed to be mycoplasma negative, and identified by short tandem repeat (STR) profiling. 5637 cells were cultured in RPMI 1640 medium (KeyGEN BioTECH, Jiangsu, China) supplemented with 10% FBS (Gibco, Carlsbad, USA), and the T24 cell line was cultured in McCoy's 5A medium (KeyGEN BioTECH) supplemented with 10% FBS (Gibco, Carlsbad, USA). Cells were maintained in a humidified 37 °C incubator with 5% CO2 and 95% air. After growing to 80% confluence, cells were digested by trypsin (Biosharp, Shenzhen, China) for passage. Recombinant human epidermal growth factor (EGF, HY-P7109), cycloheximide (CHX, HY-12320), and MG132 (HY-13259) were purchased from MedChemExpress (Monmouth Junction, NJ). All reagents were stored and used in accordance with the instructions of the manufacturer.
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3

Baicalein: In vitro and In vivo Protocols

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Baicalein (C15H10O5, MW: 270.24 g/mol) with the purity of 97% was determined by HPLC. For in vitro experiments, Baicalein was dissolved in dimethyl sulfoxide (DMSO, Sigma‐Aldrich, Missouri, USA) at a concentration of 0.1 M, stored at ‐20°C and diluted to a suitable concentration with RPMI‐1640 medium (Gibco, California, USA). Cells treated with the highest concentration of DMSO were used as controls in the indicated experiments.
In vivo study, Baicalein was prepared as intragastric administration (0.5% sodium carboxyl methyl cellulose) by Dr. Xue Ke from College of Pharmacy, China Pharmaceutical University. Sodium butyrate (NAB, Aladdin, Shanghai, China) and sodium valproate (VPA, Sanofi, Shanghai, China) were prepared as intraperitoneal administration (0.9% normal saline) by Dr. Xue Ke from College of Pharmacy, China Pharmaceutical University.
Fluorescein isothiocyanate (FITC) anti‐human CD14 and phycoerythrin (PE) anti‐human CD11b antibodies were obtained from eBioscience (San Diego, CA, USA). TSA (CSN12139) and PCI‐34051 (CSN16819) were obtained from CSNpharm (Chicago, USA). MG‐132 (HY‐13259) and Z‐VAD‐FMK (HY‐16658B) were obtained from MedChemExpress (Monmouth Junction, NJ, USA).
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4

Investigating Ferroptosis Regulators in Cells

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Anti-MFG-E8 (sc-271574; 1:200 dilution for immunoblotting, immunofluorescence, and immunohistochemistry; 2 µg per 1 mg of total protein for immunoprecipitation), anti-USP14 (sc-398009, 1:200 for immunoblotting, 2 µg per 1 mg of total protein for immunoprecipitation), and anti-GPx4 (sc-166570, 1:400 for immunoblotting) antibodies were purchased from Santa Cruz Biotechnology, USA. Anti-SLC7A11 (12691, 1:1000 for immunoblotting) and anti-Ub (3936, 1:1000) were from Cell Signaling Technology, USA. Anti-Flag (F7425, 1:1000) was from Sigma-Aldrich, USA. Antibodies against β-actin (60008–1-Ig, 1:5000), β-tubulin (10068-1-AP, 1:1000), and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (60004-1-Ig, 1:1000) were from Proteintech, China. Anti-USP14 (AF301319, 1:100 for immunofluorescence) was from AiFang Biological, China. Anti-GPx4 (ab125066, Abcam, UK, 1:100), and anti-SLC7A11 (26864-1-AP, Proteintech, China, 1:50) antibodies were used for immunohistochemistry (IHC) staining. Immobilized protein A/G beads (45350) were purchased from Thermo Fisher Scientific, USA. Control IgG (sc-2025) came from Santa Cruz Biotechnology, USA. Cycloheximide (CHX) (S7418), RSL3 (S8155), and Ferrostatin-1 (Fer-1) (S7243) were from Selleck, China. MG132 (HY-13259) was purchased from MedChemExpress, USA.
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5

Antibody-based Apoptosis and Autophagy Analysis

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Antibodies against CDK1 (ab133327), Cyclin B1 (ab32053) and CDC25C (ab32444), Caspase-3 (ab32351), Bcl2 (ab182858), LC3B (ab192890), SQSTM1/P62 (ab109012), and γH2AX (ab81299) were obtained from Abcam (Cambridge, MA, USA). Antibodies against NEK2 (66632-1-lg), TRIM21(12108-1-AP), α-tubulin (11224-1-AP), GAPDH (60004-1-Ig), Bax (60267-1-Ig), Alexa Fluor 594-conjugated donkey anti-rabbit second antibody (SA00013-4), and Alexa Fluor 488-conjugated donkey anti-mouse second antibody (SA00013-1) were obtained from Proteintech (Wuhan, China). An antibody against NEK2 (sc55601) was got from Santa Cruz Biotechnology, Inc (St Louis, MO, USA). The autophagy activator Rapamycin (RAPA, HY-10,219), Cycloheximide (CHX, HY-12,320), and MG132(HY-13,259) were purchased from MedChemExpress (MCE, USA).
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6

Cell Culture and Authentication Protocol

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BJAB (EBV-negative Burkitt's lymphoma cell line), Raji (EBV-positive Burkitt's lymphoma cell line), B95.8 (EBV-transformed tamarin (Saguinus oedipus) cell line) cells and HONE-1 (human nasopharyngeal carcinoma cell line) were cultured in RPMI 1640 supplemented with 10% fetal bovine serum (FBS). HEK293 cells were cultured in Dulbecco’s modified Eagle medium supplemented with 10% FBS. All cells were confirmed to be Mycoplasma negative before culture (TaKaRa) and were authenticated by the short tandem repeat Multiamplification Kit (Goldeneye DNA ID system 20A, Peoplespot) every six months. PBMCs were isolated from whole blood of healthy donors by Ficoll centrifugation. Primary B cells were isolated from PBMCs by MojoSort human Pan B cell Isolation Kits (480081, BioLegend) and were cultured in RPMI 1640 medium supplemented with 10% FBS. All cell lines were grown in a humidified incubator at 37 °C with 5% CO2 and obtained from American Type Culture Collection. CHX (M4879) were purchased from AbMole BioScience. STM2457 (HY-134836) and MG132 (HY-13259) was purchased from MedChemExpress.
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7

Antibodies for Western Blot and IHC

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The antibodies utilized in this investigation for western blot and immunohistochemistry analysis were as follows: PLAG1 (H00005324-M02, Novus Biologicals, 1:500 for WB, 1:50 for IHC), GPX4 (A5569, Selleck, 1:1000 for WB), AGO2 (#2897, Cell Signaling Technology, 1:1000 for WB), GAPDH (60,004–1-lg, Proteintech, 1:50,000 for WB), 4-HNE (MHN-020P, JalCA, 1:4 for IHC), Ubiquitin(AF1705, Beyotime, 1:1000 for WB). Beyotime and Selleck Chemicals were the sources of the secondary antibody conjugates labeled with Horseradish peroxidase (HRP) and Sorafenib (#S7397), respectively. Cycloheximide (CHX, HY-12320) and MG132 (HY-13259) were purchased from Medchemexpress.
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8

Systematic Evaluation of Lipids and Detergents for PD-L1 Expression

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Lipids and detergents (DMPC, DMPG, DMPE, DMPS, POPG, DH6PC, Sph and PS (Brain, Porcine)) were from Avanti Polar Lipids. Stable isotopes for NMR spectroscopy experiments were from Cambridge Isotope Laboratories. Anti-human PD-L1 antibodies (ab213524), Alexa488-conjugated anti-IgG (ab150077) and anti IgG-HRP (ab97051) were from Abcam. Anti-V5 antibodies (96025) were from Thermo and FITC anti PD-L1 antibodies (393606) were from Biolegend. MG132 (HY-13259) and metformin (HY-B0627) were from MedChem Express (MCE). The HEK293T cell line was a generous gift from Liming Sun (SIBCB). The RKO cell lines for expressing PD-L1 were generous gifts from Jie Xu (Fudan University), other cell lines used in the paper were from Cell Bank of Chinese Academy of Sciences.
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9

Ferroptosis Regulation in Cancer Cells

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Tim-AIII (purity >98%) was purchased from Chengdu Herbpurify Co., LTD (Z-019, China) and was dissolved in dimethyl sulfoxide (DMSO, 196055, MP Biomedicals, USA) to prepare a stock solution of 10 mM and stored at -20°C. Mouse anti-GPX4 (67763-1-Ig) antibody, rabbit anti-HSP90 (13171-1-AP), E-Cadherin (20874-1-AP), Vimentin (10366-1-AP), Snail-1 (13099-1-AP), Snail-2 (12129-1-AP), N-Cadherin (22018-1-AP) antibodies and HRP-conjugated anti-heavy chain of rabbit IgG antibody (SA00001-7H) were purchased from Proteintech (Wuhan, China). Rabbit anti-GPX4 (A1933), FTL (A11241), HMOX-1 (A1346), SLC40A1 (A14885), SLC7A11 (A13685) Ubiquitin (A19686) and β-actin (AC004) antibodies were purchased from ABclonal (Wuhan, China). The HRP-labeled goat anti-rabbit IgG and HRP-labeled goat anti-mouse secondary antibody was purchased from Beyotime (Shanghai, China). Chloroquine (CQ, HY-17589A), Z-VAD-FMK (HY-16658B), Necrostatin-1 (Nec-1, HY-15760), Ferrostatin-1 (Fer-1, HY-100579), N-acetylcystein (NAC, HY-B0215), tanespimycin (HY-10211), trolox (HY-101445), cycloheximide (CHX, HY-12320) and MG-132 (HY-13259) were purchased from Med Chem Express (Shanghai, China). The recombinant human HSP90 alpha protein (ab48801) was provided by Abcam (Shanghai, China). The recombinant Human GPX4 protein (P0633) was provided by Fine Biotech (Wuhan, China).
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10

Bladder Cancer Cell Lines Study

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The cell lines, used in this study, were acquired from the Chinese Academy of Sciences (Shanghai, China). The human BCa cell lines namely, RT4, T24, UMUC3, EJ, and SW780 were used. The immortalized human normal bladder epithelial cell line, SV-HUC-1 was also used. Here, the RT4 cell line was cultured in the McCoy's 5A medium (Thermo Fisher Scientific, Inc. USA), SV-HUC-1 in the F12k medium (Sigma-Aldrich, St. Louis, MO, USA), and T24, UMUC3, EJ, and SW780 cell lines were cultured in the RPMI-1640 medium (Thermo Fisher Scientific, Inc. USA). All cell culture mediums were supplemented with 10% fetal calf serum (FCS; Thermo Fisher Scientific, Inc. USA) and 1% penicillin /streptomycin (Hyclone, Logan, UT, USA). These cell lines were incubated in an incubator containing 5% CO2 at 37°C. Other compounds like chloroquine (CQ, HY-17589A), necrostatin 1 (nec-1, HY-15760), erastin (HY-15763), ferrostatin-1 (fer-1, HY-100579), RSL3 (HY-100218A), NCT-502 (HY-117240), actinomycin D (HY-17559), and MG-132 (HY-13259) were purchased from MedChemExpress (Shanghai, China).
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