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4 protocols using cfx384 touch machine

1

Quantitative PCR Analysis of Treated Cells

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For qPCR analysis, protein were added to plated cells and incubated for either 2 or 8 h at 37 °C. Cells were then collected and RNA isolated as described below. Total RNA was isolated from treated BV2 cells using TRIzol reagent (LifeTechnologies), following the manufacturer protocol. Reverse transcription of 200 µg total RNA was performed using SuperScript III reverse transcriptase (LifeTechnologies) and random hexamer primers (LifeTechnologies). Semi-quantitative RT-PCR was performed using 1 µL of the resulting cDNA in a 5 µL total volume containing SSoAdvanced Sybr Green (BioRad) and murine primers (IDT) targeting the genes of interest. For amplification and recording, a CFX384 Touch machine (BioRad) was used, and the results were evaluated using the manufacturer’s software. Amplification specificity was confirmed by melting curve analysis, with quantification performed using the ΔΔCt method.
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2

Recombinant Antibody Characterization Protocol

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Recombinant IgG and scFv-Fcs were expressed in Expi293 cells (ThermoFisher, Waltham, MA, USA) and purified using protein A Fast protein liquid chromatography with subsequent preparative size exclusion chromatography (SEC). Proteins were subsequently exchanged into a phosphate-buffered saline (PBS) and characterized using SDS-PAGE, Western blotting, analytical SEC, and the SYPRO orange ThermoFleur assay.
Proteins were characterized as a function of temperature using the ThermoFleur assay through the addition of 5-μM protein to SYPRO orange. Temperature and fluorescence monitoring were performed using a CFX384 Touch machine (Bio-Rad, Hercules, CA, USA), with temperature increased from 25 °C to 90 °C; samples were incubated for 5 s at each temperature prior to fluorescence measurement [24 (link),25 (link)].
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3

Quantitative Real-Time PCR Analysis

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Total RNA from treated cells was extracted using the Quick-RNA Mini-Prep kit (Zymo), and RNA concentration was determined using a Synergy H1 Hybrid Multi-Mode Microplate Reader (BioTek). Reverse transcription of total RNA was performed using SuperScript III First-Strand Synthesis SuperMix (Thermo Fisher Scientific) according to the manufacturer’s guidelines. qRT-PCR reactions were detected on a CFX384 Touch machine (Bio-Rad) using iQ SYBR Green Supermix (Bio-Rad). RNA expression levels were calculated using the comparative Ct method (2-ΔΔCT) normalized to β-actin. The qRT-PCR primer sets used in this study are listed in table S1.
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4

Isolation and Quantification of Peritoneal Macrophage RNA

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After mice were anaesthetized, 2 mL of sterile saline was administered IP and the abdomen was massaged for 5 min. One hundred microliters of peritoneal fluid was isolated and cultured in DMEM/F-12 overnight. RNA was isolated from adherent macrophages with GeneJET RNA purification kit (ThermoFisher Scientific). cDNA libraries were prepared from solutions with equivalent RNA mass using iScript reverse transcription supermix (Bio-Rad Laboratories, Hercules, CA, USA), and gene expression was measured by real-time quantitative PCR with iTaq universal SYBR Green supermix (Bio-Rad Laboratories) on a CFX384 Touch machine (Bio-Rad Laboratories).
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