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Applied biosystems 7500 real time rt pcr system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Applied Biosystems 7500 real-time RT-PCR system is a laboratory instrument designed for real-time reverse transcription polymerase chain reaction (RT-PCR) analysis. The system features optical detection capabilities and can be used for a variety of nucleic acid quantification applications.

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4 protocols using applied biosystems 7500 real time rt pcr system

1

Quantitative Analysis of Nrf2 and Antioxidant Genes

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RNA was isolated using Trizol® (Invitrogen Life Technologies, Carlsbad, CA, USA) with the Direct-zol™ RNA MiniPrep kit (Zymo Research, Irvine, CA, USA) according to the manufacturer’s instructions. Real-time PCR was then performed using primers, as described previously [58 (link)]. Quantitative RT-PCR analysis was performed using RT2 SYBRgreen quantitative PCR mastermix (Qiagen) in the Applied Biosystems 7500 real-time RT-PCR system (Life Technologies, Grand Island, NY, USA). Primers for Nrf2 were F: 5′-GGTTGGCCCTTTCCTGCTTT-3′ and R: 5′-TCCATGTCCCTTGACAGCACA-3′; primers for HO-1 were F: 5′-AACTTTCAGAAGGGCCAGGT-3′ and R: 5′-CTGGGCTCTCCTTGTTGC-3′; primers for ABCC1 were F: 5′-GTGGCTATCAAGGGCTCCGT-3′ and R: 5′-CCCACTGGGCAGGATTTCCA-3′; primers for ABCG2 were F: 5′-AGATGGGTTTCCAAGCGTTCAT-3′ and R: 5′-CCAGTCCCAGTACGACTGTGACA-3′; primers for NQO1 were F: 5′-TGAAGGACCCTGCGAACTTTC-3′, and R: 5′-GAACACTCGCTCAAACCAGC-3′. Relative abundance of target mRNA was determined from Ct values and normalized to the geometric mean of the housekeeping gene GAPDH.
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2

Quantitative RT-PCR Analysis of mRNA

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RNA was isolated using Trizol® (Invitrogen Life Technologies, Carlsbad, CA, USA) with the Direct-zol™ RNA MiniPrep kit (Zymo Research, Irvine, CA, USA) according the manufacturer’s instructions. qRT-PCR was then performed using primers as described [41 (link)]. Quantitative RT-PCR analysis was performed using RT2 SYBRgreen quantitative PCR mastermix (Qiagen, Montréal, PQ, Canada) in the Applied Biosystems 7500 real-time RT-PCR system (Life Technologies, Grand Island, NY, USA). The relative abundance of target mRNA was determined from cycle threshold values (Ct) and normalized to the geometric mean of the housekeeping gene cyclophilin A.
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3

Quantitative Analysis of miRNA Expression

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RNA was extracted from the cells using TRIzol (Invitrogen) following the manufacturer’s protocol. The total RNA was reverse transcribed to cDNA using the Revert Aid First Strand cDNA Synthesis Kit (Thermo scientific, USA). SYBR Green quantitative PCR master mix from Qiagen was used for quantitative RT-PCR analysis on the Applied Biosystems 7500 real-time RT-PCR system from Life Technologies (Grand Island, NY, USA). The expression of microRNAs was measured by utilizing TaqMan microRNA assay kit from Applied Bio-systemsTM (life Technologies, Carlsbad, California, USA). As internal normalization controls for mRNA and miRNA, GAPDH and U6 were used. The relative quantitation of miRNA expression was calculated using the 2−∆∆Ct method, with the ∆∆Ct value determined as the difference between the Ct value of the treatment group and the control group. A list of primers used in this study can be found in Supplemental Material Tables S1 and S2.
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4

Quantitative RNA Expression Analysis

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RNA was isolated using an ultRNA Column Purification kit (Applied Biological Materials, Richmond, BC, Canada). cDNA was generated using the 5X All-In-One Reverse Transcription MasterMix (Applied Biological Materials, Richmond, BC, Canada). qRT-PCR was performed using EvaGreen qPCR master mix (Applied Biological Materials) in the Applied Biosystems 7500 real-time RT-PCR system (Life Technologies, Grand Island, NY, USA). The relative abundance of target genes was normalized to glyceraldehyde 3-phosphate dehydrogenase (GAPDH), with HCMV-exposed cells normalized against cells exposed to the filtered control at each time point, when applicable. Primers are listed in Supplementary Table S1.
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