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8 protocols using sc 7962

1

Comprehensive Protein Expression Analysis

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Western blotting was performed as described [9 (link)] on 30 μg of protein/sample with antibodies against EZH2 (E7031, Sigma-Aldrich; 1:2000 dilution), actin (sc-1616, Santa Cruz; 1:5000), HA-tag (sc-805, Santa Cruz; 1:2000), histone H3K27me3 (ab6002, Abcam; 1:1000), histone H3K27ac (ab4729, Abcam; 1:1000), total histone H3 (#4499, Cell Signaling; 1:1000), p53 (ab28, Abcam; 1:2000), C/EBP β (sc-7962, Santa Cruz; 1:2000), p300 (#54062, Cell Signaling; 1:500), CBP (#7389, Cell Signaling; 1:500), BRG1 (#49360, Cell Signaling; 1:500), cleaved caspase 3 (#9661, Cell Signaling; 1:1000), and cleaved PARP (#5625, Cell Signaling; 1:1000).
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2

Quantitative Western Blot Analysis

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The total protein was extracted with RIPA lysate, and the concentration was determined with BCA kit (Beyotime, Shanghai, China). Twenty micrograms of protein per lane was isolated by 10 or 12% SDS-PAGE and transferred to PVDF membrane (Millipore, United States). After the film was sealed, incubate with 5% skim milk powder and primary antibody at 4°C overnight. HRP-conjugated secondary antibodies were washed three times with TBST and cultured in membrane at room temperature for 1 h. Finally, enhanced chemiluminescence western blotting detection system was used to observe the protein bands and the relative protein expression was calculated by Image J software. In our experiments, the antibodies including HAS2 (dilution 1:100, Sc-514737, Santa Cruz), C/EBPβ (dilution 1:200, Sc-7962, Santa Cruz), TNF-α (dilution 1:200, Sc-28318, Santa Cruz), IL-6 (dilution 1:1,000, 66146-1-Ig, Proteintech), IL-1β (dilution 1:1,000, #12242, CST), β-actin (dilution 1:2000, 60008-1-Ig, Proteintech), and goat anti-mouse IgG (dilution 1:5,000, ZSGB-Bio, China).
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3

Comprehensive Protein Expression Analysis

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Western blotting was performed as described [9 (link)] on 30 μg of protein/sample with antibodies against EZH2 (E7031, Sigma-Aldrich; 1:2000 dilution), actin (sc-1616, Santa Cruz; 1:5000), HA-tag (sc-805, Santa Cruz; 1:2000), histone H3K27me3 (ab6002, Abcam; 1:1000), histone H3K27ac (ab4729, Abcam; 1:1000), total histone H3 (#4499, Cell Signaling; 1:1000), p53 (ab28, Abcam; 1:2000), C/EBP β (sc-7962, Santa Cruz; 1:2000), p300 (#54062, Cell Signaling; 1:500), CBP (#7389, Cell Signaling; 1:500), BRG1 (#49360, Cell Signaling; 1:500), cleaved caspase 3 (#9661, Cell Signaling; 1:1000), and cleaved PARP (#5625, Cell Signaling; 1:1000).
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4

Protein Extraction and Western Blot Analysis

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Total proteins were extracted from T-HESCs using a lysis buffer (Beyotime, Shanghai, China) supplemented with a protease inhibitor cocktail (1:100 dilution; CWBio, Beijing, China). All extracted proteins were heated at 100°C for 10 min and then stored at -80°C. The proteins were separated on a 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis system and transferred to polyvinylidene difluoride membranes (Millipore, Burlington, MA, USA). The membranes were blocked with 5% nonfat milk in Tris-buffered saline with Tween-20 and incubated with the following primary antibodies: anti-RARα (1:1,000 dilution; 62294, lot #1, Cell Signaling Technology, Danvers, MA, USA), anti-C/EBPβ (1:150 dilution; SC-7962, lot#12017, Santa Cruz Biotechnology, Dallas, TX, USA) and anti-GAPDH (1:5,000 dilution; SA00001-1/SA00001-2, lot#20000275/20000311, Proteintech, Wuhan, China). The membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (1:5,000 dilution, Proteintech). Western blotting was then performed, and the labeled protein bands were developed using HRP (Millipore). The intensity of the bands was determined using Image Lab software (Bio-Rad, Hercules, CA, USA).
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5

Antibody Validation for Cell Biology

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Details of the specific antibodies that were used in the study are as follows: anti-CEP128 (HPA001116, Sigma-Aldrich, WB: 1:1000, IF: 1:200); anti-Ac-Tubulin (ab24610, abcam, IF: 1:1000); anti-NIN (A8215, ABclonal, WB: 1:1000); anti-CEP170 (27325-1-AP, Proteintch, WB: 1:500); anti-YY1 (sc-7341, Santa Cruz Biotechnology, WB: 1:500); anti-GR-β (sc-393232, Santa Cruz Biotechnology, WB: 1:500); anti-SEPT4 (Septin 4) (A10238, ABclonal, IF: 1:100); anti-RCBTB2 (13225-1-AP, Proteintech, WB: 1:1000, IF: 1:50); anti-WBP2NL (22587-1-AP, Proteintech, WB: 1:500, IF: 1:50); anti-CRISP1(MAB4675, R&D Systems, WB: 1:500, IF: 1:50); anti-PRSS55 (bs-19443R, Bioss, WB: 1:1000, IF: 1:50); anti-ubiquitin (ab7780, Abcam, WB: 1:500), anti-GAPDH (ab8245, Abcam, WB: 1:1000); anti-CEBPβ (sc-7962, Santa Cruz Biotechnology, WB: 1:500); anti-Centriolin (sc-365521, Santa Cruz Biotechnology, WB: 1:500).
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6

ChIP Analysis of CEBPB in 3T3-L1 Cells

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Chromatin immunoprecipitation (ChIP) was performed following the instructions for SimpleChIP® Enzymatic Chromatin IP Kit (Cell Signaling). For each immunoprecipitation performed, 1.6 × 106 3T3-L1 cells were seeded and grown to 2 days post–confluence (T0) before being treated, or not, with 1.0 uM DEX. After 20 h cells were fixed with 1% formaldehyde followed by glycine incubation. After cell lysis, chromatin was fragmented by micrococcal digestion and nuclear membranes were broken by sonication with a Bioruptor Sonicator (Diagenode). An aliquot of the digested chromatin (Input) was removed before sample immunoprecipitation with antibodies against either CEBPB (sc-7962, Santa Cruz Biotechnologies,) or a non-specific IgG control (Normal Rabbit IgG #2729, Cell Signaling). The complex co-precipitates were captured by Protein G magnetic beads and the cross-links were reverted before DNA purification. Chip-qPCR primers are listed in Table 1.
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7

Investigating Protein Associations by Immunoprecipitation

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To investigate protein association, immunoprecipitations were performed with Protein G sepharose (Sigma) following the manufacturer’s instruction. Briefly, ARCMs were lysed with immunoprecipitation buffer (50 mM Tris, 250 mM NaCl, 0.25% v/v TritonX- 100, and 10% Glycerol, pH7.4). After, quantification, 2 mg of the protein extract was immunoprecipitated with antibodies against CEBPβ (sc-7962, Santa Cruz Biotechnology) or IgG (Cell Signaling, 2729). Immune complexes were eluted in Laemmli sample buffer (65.8 mM Tris-HCl, pH6.8, 2.1% SDS, 26.3% glycerol, 0.01% bromophenol blue). Precipitated and input proteins were subjected to SDS-PAGE and immunoblotted using the respective antibodies.
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8

Protein Immunoblotting Analysis

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Proteins were resolved by SDS-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes, which were then incubated with the following antibodies: OGT (1:1,000, O6264, Sigma-Aldrich, St. Louis, MO), RL2 (1:1,000, MA1-072, Thermo Scientific, Waltham, MA), adiponectin (1:1,000, ab22554, Abcam, Cambridge, UK), CCAAT enhancer-binding protein-α (C/EBPα) (1:1,000, sc-365318, Santa Cruz Biotechnology, Santa Cruz, CA), C/EBPβ (1:1,000, sc-7962, Santa Cruz Biotechnology), β-tubulin (1:500, sc-5274, Santa Cruz Biotechnology), and β-actin (1:10,000, A5316; Sigma-Aldrich). After additional washing, the membranes were incubated with horseradish peroxidase-linked secondary antibodies, followed by chemiluminescence detection.
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