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Primescript reverse transcription master mix

Manufactured by Takara Bio
Sourced in Japan, China

PrimeScript Reverse Transcription Master Mix is a ready-to-use reagent for the reverse transcription of RNA to cDNA. It is designed to provide efficient and reliable conversion of RNA to cDNA for various downstream applications.

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12 protocols using primescript reverse transcription master mix

1

Quantitative Analysis of Hepatitis B Virus

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DNase-treated RNA was reverse transcribed using PrimeScript reverse transcription (RT) master mix (TaKaRa Bio, Inc.). The target region of HBV RNA and HBV DNA was amplified using the following barcoded pair of primers (Fig. S2): HBV QS-FW, 5′-AGACGAAGGTCTCAATCGCC-3′ (nucleotides [nt] 2393 to 2412), and HBV QS-RV, 5′-GTTCCCAAGAATATGGTGACCC-3′ (nt 2814 to 2835). The PCR mixture (50 μl) contained 25 μl of PrimeStar HS premix (TaKaRa Bio, Inc.), 1 μl of forward primer (10 μM), 1 μl of reverse primer (10 μM), 5 μl of DNA or cDNA template, and 18 μl of double-distilled water. The PCR cycling conditions were as follows: 95°C for 5 min, 35 cycles at 95°C for 15 s, 56°C for 30 s, and 72°C for 30 s, with a final extension of 72°C for 6 min. Deep sequencing of the PCR products was performed using an Illumina MiSeq platform according to the manufacturer’s 2 × 300-bp paired-end-sequencing protocol.
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2

Quantitative RT-PCR Analysis of hPDLSCs

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The hPDLSCs were cultured for 7 days, and total mRNA was extracted using a RNA-Quick purification kit (YISHAN Biotechnology, Shanghai, China) according to the manufacturer’s instructions. Next, first-strand cDNA was synthesized using PrimeScript™ reverse transcription (RT) Master Mix (TaKaRa, Shiga, Japan). PCR was performed with SYBR Green I Master Mix (Roche Applied Science, Basel, Switzerland) following the manufacturer’s protocol. Gene-specific primers used in this study were commercially synthesized, and their sequences are listed in Table 1.
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3

Quantitative RT-PCR Analysis of Cytokine Levels

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Total RNA from spleen tissue was extracted with TRIzol reagent (Thermo Fisher Scientific, Waltham, MA, USA) using a high-throughput tissue grinder (Shanghai Wonbio Technology Co., Ltd., Shanghai, China). cDNA was synthesized using the PrimeScript reverse transcription (RT) Master Mix (Takara Bio, Shiga, Japan) according to the manufacturer's protocol and used as a template for quantitative RT polymerase chain reaction qRT-PCR using TB Green Premix Ex Taq (2×, Takara Bio, Shiga, Japan). Data were analyzed using the 2ΔΔCT method and normalized to glyceraldehyde 3-phosphate dehydrogenase (GAPDH) as an endogenous reference. The following primers were used IL-6, 5′-CACAGAGGATACCACCCACA-3′ and 5′-CAGAATTGCCATTGCACAAC-3′; IL-17, 5′-GCCGAGGCCAATAACTTTCT-3′ and 5′-GAGTCCAGGGTGAAGTGGAA-3′; TNF-α, 5′-GGAAAGCATGATCCGAGATG-3′ and 5′-CGAGCAGGAATGAGAAGAGG-3′; and GAPDH, 5′-CCACCCATGGCAAATTCCATGGCA-3′ and 5′-TCTAGACGGCAGGTCAGGTCCACC-3′.
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4

Quantitative RNA Expression Analysis

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Total RNA was extracted from cells using Trizol Reagent (ThermoFisher). RNA purity and concentration were measured by ND-1000 (NanoDrop Technologies). RNA (1 µg) was reverse transcribed using PrimeScript Reverse Transcription Master Mix (TaKaRa, #RR036A). qPCR was performed with SYBR Green (Takara) in a QuantStudio Flex 7 Real Time PCR system (Quantstudio Real Time PCR software v1.7.2, Applied Biosystems) as follows: 10 min at 95 °C, and then 40 cycles of 15 s at 95 °C, 30 s at 60 °C and 30 s at 72 °C. All reactions were run in triplicates and normalized to GAPDH by 2−ΔΔCT method. Primer sequences are listed in Table S3.
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5

Quantifying miR-22 and mRNA Levels

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Total RNA was extracted using TRIzol reagent (Invitrogen, Carlsbad, CA) and reverse transcribed into cDNA by using Primescript Reverse Transcription Master Mix (TaKaRa, Japan). miR-22 and mRNA expression levels were quantified by Real-time PCR on VII7 system (Applied Biosystems, CA) by employing SYBR-Green PCR Master Mix (Applied Biosystems, CA). The primers were designed using Primer3 Input online version, and the primer sequences are listed in Supplementary Table S2. U6 and GAPDH were utilized as internal controls to normalize the miR-22 and mRNA levels. The RNA were obtained from three individual experiments under same condition.
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6

Quantitative Real-Time PCR Analysis

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Total RNA was isolated from cultured macrophages after various treatments and from mouse alveolar bones using TRIzol reagent (Life Technologies, CA, USA) according to the manufacturer’s instructions. Complementary DNA was amplified from 2 μg of total RNA in a volume of 10 μL using PrimeScript Reverse Transcription Master Mix (TaKaRa). Quantitative real-time PCR was performed using SYBR Green Premix Ex Taq (TaKaRa) on an ABI 7900 system (Applied Biosystems, USA). All the primer sequences are listed in Supplementary Table 2. All data were normalized to Gapdh expression. Quantification of qPCR results was performed by the 2-△CT method.
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7

Gene Expression Analysis of NSUN6 and NM23-H1

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Total RNA was extracted using the standard TRIzol method, and yields/purity were measured using the Nanodrop 2000 (Thermo Fisher Scientific, USA). Total RNA was reverse transcribed into cDNA using PrimeScript Reverse Transcription Master Mix (code No. RR036A; Takara) and subsequently used for PCR amplification of NSUN6 and NM23-H1 (and GAPDH as internal control) using an ABI StepOne Plus System (Applied Biosystems, NJ, USA). There were 40 cycles of 95°C for 5 min, 95°C for 20 s, and 59°C for 15 s. Relative expression was calculated using the 2−ΔΔCt method. The primer sequences used for amplification were NSUN6 sense, 5′-ATC TGC GTC CGT TTC ACC-3′, and antisense, 5′-GCT TCC ACC ACA CCT CAT C-3′; NM23-H1 sense, 5′-GCA GCC GGA GTT CAA ACC TA-3′, and antisense, 5′-TGC ACA CCA GGC TGA CTT AG-3′; GAPDH sense, 5′-TAT GAT GAT ATC AAG AGG GTA GT-3′, and antisense, 5′-TGT ATC CAA ACT CAT TGT CAT AC-3′.
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8

Gastrocnemius RNA Extraction and RT-qPCR

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Total RNA from gastrocnemius tissues was extracted using TRIzol™ Reagent (#15,596,026, Invitrogen, Waltham, Massachusetts USA). The concentration and purity of RNA were determined by Nanodrop (Thermo Fischer, Waltham, Massachusetts, USA), and 1000 ng RNA was purified with an A260/A280 ratio of 1.8–2.0 and then reverse transcribed into cDNA using PrimeScript™ Reverse Transcription Master mix (# RR036A, TaKaRa, Kusatsu, Shiga, Japan). Reverse transcription polymerase chain reaction (RT-PCR) was performed using PrimeScript™ RT Master Mix (TaKaRa, Japan). A total of 20 μL reaction system was used, including DNA template 1.6 μL and SYBR 10 μL, and primers 0.4 μL and ddH2O 7.6 μL. Primers used in this study are listed in Additional file 1: Table S2. The PCR reaction cycles were set as follows: 30 s at 95 °C, then 5 s at 95 °C and 30 s at 60 °C for 40 cycles. Fluorescence signals were normalized to Actb using the 2 − ΔΔCT method.
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9

Myocardial Gene Expression Analysis

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Total RNA was extracted from myocardium using TRIzol reagent (Thermo Fisher Scientific, Waltham, MA, USA) and reverse-transcribed into complementary DNA (cDNA) with a PrimeScript Reverse Transcription Master Mix (TaKaRa, Shiga, Japan), according to the protocol per manufacturer’s instruction. Quantitative real-time PCR (qPCR) was performed with TB Green premix Ex Taq II (TaKaRa) on an Applied Biosystems 7500 Real-Time PCR System (Applied Biosystems, Foster City, CA, USA). In order to analyze relative gene expression with real-time PCR, we selected two reference genes: β-actin and glyceraldehyde 3-phosphate dehydrogenase (GAPDH). The intra- and inter-assay variation was tested. The real-time PCR efficiency of the two reference genes was similar, and expression of the two reference genes was constant. We selected GAPDH as reference gene and expression of the target gene was normalized to GAPDH. The primers listed in Table 1. Relative expression levels were calculated using the cycle threshold (2−ΔΔCt) method.
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10

Quantifying Gene Expression via RT-qPCR

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Total RNA was isolated from tissues or macrophages after various treatments using TRIzol reagent (Thermo Fisher Scientific, USA) according to the manufacturer’s instructions. Complementary DNA was amplified from 2.0 μg of total RNA in a final volume of 10 μL using PrimeScript Reverse Transcription Master Mix (TaKaRa, Dalian, China), then quantitative real-time PCR was performed using SYBR Green Premix Ex Taq (TaKaRa) on an ABI 7900 (Applied Biosystems, USA) using the following parameters: 95 °C for 10 min, followed by 40 cycles of 95 °C for 15 s and 60 °C for 1 min. Data for all genes were processed using the 2−ΔΔCt method and normalized to the internal control glyceraldehyde-3-phosphate dehydrogenase (GAPDH). The primers used for real-time PCR are listed in Appendix Table 1.
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