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13 protocols using versamax absorbance microplate reader

1

ELISA Quantification of Signaling Proteins

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The ELISA procedure is briefly described as follows. All experiments were done in duplicate. After equilibration of the contents of the kits to room temperature, 100 μl standard dilutions, control specimens, and unknown samples (diluted 1:10) were pipetted into specific antibody coated wells and incubated for at least 2 hours at room temperature (RT). Then incubation with 100 μl of one of the primary antibodies (anti-phospho-ERK1/2 [pThr202/Tyr204]), anti-ERK1/2 anti-phosphop 38 (pThr180/pTyr182), anti-p38, anti-phospho-JNK (pThr183/pTyr185), or anti-JNK for 1 hour at RT was carried out. The plates were undergone 3 times washing with PBS-T and incubation with blocking buffer containing anti-Rabbit IgG-HRP conjugated antibody for 30 minutes at RT. After washing 3 times washes with PBS-T, the plates were incubated with stabilized chromogen for 30 minutes at RT. The ELISA reaction was halted by the addition of 1M H2SO4, and the signals were measured by a spectrophotometer (VersaMaxTM Absorbance Micro plate Reader, Molecular Devices, LLC, US) at 450 nm, with plate background correction at 540 nm. Platelet P-selectin was measured by ELISA in the same manner.
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2

Global DNA Methylation Quantification

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During long-term treatment (8 days), genomic DNA was extracted from cells to determine the global methylation level at Day 4 and Day 8. DNA extraction and purification were performed with DNeasy Blood & Tissue Kit (Qiagen). Global methylation was quantified by MethylFlash Methylated DNA Quantification Kit (Epigentek). 100 ng DNA was input for immunoassay and the generated colorimetric signal was measured by using a VersamaxTM absorbance microplate reader (Molecular Device). The percentage of DNA methylation was calculated by normalizing the optical intensity as to the positive control DNA.
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3

Quantifying CD20 on Extracellular Vesicles

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CD20 was measured on the surface of serum derived EVs using 96-well ELISA plates coated with Human B-lymphocyte MS4A1 (CD20) (Catalog # MBS283766; MyBioSource, Inc. San Diego, CA, USA). Briefly, EV samples were diluted at 1:2 in 1X PBS containing 0.1% Tween 20 before loading onto ELISA plates and the assay was carried out according to manufacturer’s instructions (MyBioSource, Inc.). Results were acquired for CD20 standards and EV samples from two independent reproducible readings of duplicate wells at 450 nm using a VersaMax Absorbance Microplate Reader (Molecular Devices, LCC., San Jose, CA, USA) with SoftMax Pro Software (5.4) for Data Acquisition & Analysis.
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4

Microbial Susceptibility Testing for P. aeruginosa

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The MIC assay was performed following the guidelines from the Clinical and Laboratory Standards Institute with slight modifications (16 (link)). Briefly, P. aeruginosa was incubated at 37°C overnight and diluted in cation-adjusted Muller-Hinton broth (CAMHB) to approximately 1 × 106 CFU/mL. Bacteria were incubated with 2-fold diluted carbapenems or peptides in 96-well plates (Greiner Bio-One, Frickenhausen, Germany) at 37°C overnight. After incubation, the final OD600 was measured using the VersaMax absorbance microplate reader (Molecular Devices, CA, USA), and the minimal inhibition concentration was determined by the concentration of wells at which no bacterial growth was detected. The assay was performed in triplicate, with each sample performed in triplicate wells.
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5

Quantitative Protein Expression Analysis

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Total protein extract was isolated using 1X Radio-Immunoprecipitation Assay buffer (RIPA; Sigma) supplemented with ethylene-di-amine-tetra-acetic-acid (1%; EDTA, Sigma) and protease inhibitor cocktail (1%; Sigma). Total protein concentration was quantified using Protein Assay Reagent (Bio-Rad, Hercules, CA) and VersaMax absorbance microplate reader (595nm, Molecular Devices). The 80μg of total protein was loaded in each well. Changes in protein expression were quantified by immunoblotting for CFTR (596-ab; CF Foundation), NF-κB (Santa Cruz Biotechnology, Santa Cruz, CA), or β-actin (Sigma) antibodies. The secondary antibodies were anti-mouse (Amersham, Amersham, UK) and anti-rabbit (Amersham).
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6

Evaluating Cytotoxic Compounds on 4T1-luc2 Cells

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4T1-luc2 cells were plated in a 96-well plate (Costar) in 100 μl medium at a density of 10,000 cells per well and left over night to adhere. The next day, the medium was replaced with medium containing the experimental compounds: HQ4, HQ4-DTPA, HQ5, and Gambogic acid (GA), three wells per condition. After 24 h, cell viability was measured using a nonradioactive colorimetric MTS viability assay (Promega Benelux) according to the manufacturer’s protocol. Optical absorption was measured at 490 nm with a Versamax absorbance microplate reader (Molecular Devices).
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7

C2C12 Myotube Treatment Assay

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C2C12 mouse C3H muscle myoblasts (cat. no. 91031101, Sigma-Aldrich) were cultured as previously described [28 (link)]. Proliferating C2C12 cells were propagated in DMEM (ThermoFisher) supplemented with 5% fetal bovine serum (FBS), 20 mM HEPES, 100 U ml-1 penicillin, 100 μg ml-1 streptomycin and 1% L-glutamine in a humidified atmosphere of 95% air/5% CO2 at 37°C. Differentiation was achieved upon exposure of proliferating C2C12 cells to a differentiation medium (DM) containing DMEM (25 mM glucose) supplemented with 2% horse serum, 20 mM HEPES, 100 U ml-1 penicillin, 100 μg ml-1 streptomycin and 1% L-glutamine for six days. To assess C2C12 myotube treatment, cells were first synchronized in fresh DM for 24 hours and then treated with the CB1 receptor agonist ACEA or the CB1 receptor antagonist AM251 at concentrations of 20, 50, 500, 103 and/or 5∙103 nM for 2 hours. After treatment, the cells were first cultured in fresh DM without serum for 2 hours and then incubated in 10 nM insulin for 10 minutes. Finally, 0.2 mg ml-1 Nitroblue Tetrazolium (NBT) was also added into the medium for a 3-hours incubation at 37°C in order to detect diaphorase/oxidative reaction at an optic density of 560 nm (VersaMax Absorbance Microplate Reader, Molecular Devices).
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8

Microbial Susceptibility Testing for P. aeruginosa

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The MIC assay was performed following the guidelines from the Clinical and Laboratory Standards Institute with slight modifications (16 (link)). Briefly, P. aeruginosa was incubated at 37°C overnight and diluted in cation-adjusted Muller-Hinton broth (CAMHB) to approximately 1 × 106 CFU/mL. Bacteria were incubated with 2-fold diluted carbapenems or peptides in 96-well plates (Greiner Bio-One, Frickenhausen, Germany) at 37°C overnight. After incubation, the final OD600 was measured using the VersaMax absorbance microplate reader (Molecular Devices, CA, USA), and the minimal inhibition concentration was determined by the concentration of wells at which no bacterial growth was detected. The assay was performed in triplicate, with each sample performed in triplicate wells.
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9

Cell Viability Assay Using CCK-8

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Cell viability was examined using a Cell Counting Kit-8 (CCK-8) (Beijing Solarbio Science & Technology Co., Ltd.) assay. H9c2 and HL-1 cells were cultured in 96-well plates (2×103 cells/well) and were treated as aforementioned. Subsequently, 10 µl CCK-8 solution was added to each well and incubated at 37°C for 2 h. A microplate reader (VersaMax Absorbance microplate reader; Molecular Devices) was used to analyze the absorbance at 450 nm. To increase the reliability of measures, each experiment was performed three times.
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10

Vibrio anguillarum Bacterial Growth

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To cultivate bacteria for growth experiments, V. anguillarum cells grown overnight at 27 °C in LB20 supplemented with the appropriate antibiotics were harvested by centrifugation (9000×g, 2 min), washed twice and resuspended in in NSS. A 200 μl aliquot of the V. anguillarum NSS suspension was transferred into a 96-well plate with a clear flat bottom and the optical density at 600 nm (OD600) was read by a VersaMax™ Absorbance Microplate Reader (Molecular Devices). The V. anguillarum NSS suspension was prepared to an OD600 of 0.420 (~4 × 107 CFU/ml) and diluted 1:100 into fresh media. Growth was monitored either by measurement of the OD600 or by serial dilution and plate counts.
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