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8 protocols using superoxide dismutase sod

1

Antioxidant and Apoptosis Pathway Analysis

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AEE (99.5%) was prepared in Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS (Lanzhou, China). MS-gradeacetonitrile was purchased from Thermo Fisher Scientific (Waltham, MA, USA). Formic Acid (98.0%, for LC-MS) was purchased from Tokyo Chemical Industry (Shanghai, China). Catalase assay kit was purchased from Solarbio (Beijing, China). Glutathione peroxidase (GPx), GSH and GSSG assay kit, superoxide dismutase (SOD), and malondialdehyde (MDA) assay kit were purchased from Beyotime (Shanghai, China). Caspase-3 assay kit was purchased from Jianglai Chemical Biotechnology (Shanghai, China). The antibodies of Caspase-9, Caspase-3, Bax, Bcl-2, Cyt C, AIF, and IgG were purchased from abcam (Shanghai, China). Alanine aminotransferase kit and aspartate aminotransferase kit were purchased from Mlbio (Shanghai, China).
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2

Melanoma Cell Culture and Antioxidant Assays

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The human melanoma cell A375 (purchased from ATCC) were maintained in RPMI 1640 medium (Gibco®) supplemented with 10% foetal calf serum (FCS, Gibco®) with 100 U mL-1 penicillin and 100 U mL-1 streptomycin at 37 °C in a humidified 5%CO2 incubator. α-Tocopherol was purchased from Sigma-Aldrich. 3-[4,5-Dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide (MTT), 2-(4-amidino¬phenyl)-6-indole carbamidine dihydrochloride (DAPI), 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) and superoxide dismutase (SOD) were purchased from Beyotime Biotechnology (Beijing, China). All other chemicals were purchased from Sigma-Aldrich and were used without further purification, unless otherwise indicated. All solutions were prepared with deionized (DI) water produced by a PURELAB flex system (ELGA Corporation).
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3

Cellular Autophagy and Ferroptosis Assays

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All reactants and solvents were analytical reagents (AR) grade. 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), monodansylcadaverine (MDC), 3-methyladenine (3-MA), chloroquine, dichlorofluorescein (H2DCF-DA), deferoxamine (DFO), 4′,6-diamidino-2-phenylindole (DAPI), Roswell Park Memorial Institute (RPMI) 1640, Horse spleen ferritin, and other chemicals were purchased from Sigma-Aldrich. LC3 and ferritin antibody were obtained from Proteintech Group (Wuhan, China). Nuclear receptor coactivator 4 (NCOA4) antibody was purchased from Boster Biological Technology Co. Ltd. (Wuhan, China), and superoxide dismutase (SOD) was obtained from Beyotime Biotechnology (Beijing, China). Transient receptor potential cation channel, mucolipin subfamily, member 1 (TRPML1) antibody was purchased from Abcam (Shanghai, China). Secondary antibodies (or fluorescence labeled) were obtained from EarthOx, LLC (San Francisco, USA).
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4

Inflammatory and Oxidative Stress Markers

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Spinal cord segments containing the injury epicenter and surrounding uninjured tissues were dissociated and homogenized. The homogenates were centrifuged at 4°C at 12,000g for 15 min, and supernatants were collected and evaluated for ELISA analysis using interleukin 1β (IL-1β), tumor necrotic factor-α (TNF-α), and IL-18 commercial kits following the introduction of kits (X-Y Biotechnology, Shanghai, China).
Commercial kits were used for determining lipid peroxidation (thiobarbituric acid-reactive substances [TBARS]; Cayman Chemical, USA), ROS, catalase (CAT), glutathione peroxidase (GPX), glutathione (GSH), and superoxide dismutase (SOD) activities (Beyotime) following the manufacturer’s instructions.
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5

Metabolomic Analysis of Acetyl Phenylhydrazine-Induced Toxicity

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Acetyl phenylhydrazine (APH) was purchased from Shanghai Shenggong Biological Engineering Co., Ltd. Cyclophosphamide (CTX) was obtained from Jiangsu Shengdi Pharmaceutical Co., Ltd. Superoxide dismutase (SOD) and malondialdehyde (MDA) kits were provided by Beyotime Ltd. Methoxyamine hydrochloride (Aladdin), pyridine (chemical reagent of Sinopharmaceutical Group), N-heptane (Chengdu Cologne Chemical Reagent Factory), methanol (chromatographic purity) (Sweden Oceanpak Company), TMCS (Shanghai Chemical Industry, lot no. 75-77-4), MSTFA (MACHEREY-NA Co.), and xylitol (Tokyo Chemica) were chemical reagents.
Mice were purchased from the Experimental Animal Center of Chongqing Daping Hospital [SCXK (Yu) 2012-0005]. Then mice were housed in a 12 h light/dark and temperature-controlled room and given access to food and water ad libitum. All mice were acclimated to their environment for at least 7 d before treatment. All animal experiments were carried out in accordance with the National Institutes of Health guide for the care and use of Laboratory animals. And all animal experiments protocols were approved by the Institutional Committee on Animal Care and Use of Zunyi Medical University.
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6

Gestational Blood and Liver Analysis

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For blood parameter measurements, GTT and ITT were tested as described above (6-h fast); other measurements were performed under fed conditions. Wild-type and female mice were euthanized on day 19 of gestation. Blood was centrifuged at 1000 g for 10 min at 4 °C to collect serum and then stored at -80 °C for subsequent analysis. Liver tissue was harvested and stored at -80 °C for biochemical analysis. Total serum cholesterol (TChl), triglycerides (TG), high-density lipoprotein (HDL), low-density lipoprotein (LDL), and Malondialdehyde (MDA) levels were measured using a total cholesterol assay kit, serum triglyceride quantification kit, HDL and LDL cholesterol assay kit, and Lipid Peroxidation MDA Assay Kit. Liver lysates were prepared as previously described. Liver MDA, Superoxide dismutase (SOD), GPx, Glutathione (GSH), and CAT using Lipid Peroxidation MDA Assay Kit, Total SOD Assay Kit and NBT, Total Glutathione Peroxidase Assay Kit, Glutathione reductase detection kit measurement, and catalase detection kit were purchased from Beyotime Biotechnology (Shanghai, China).
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7

Photodynamic Therapy in Macrophages

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THP-1 derived macrophages were divided randomly into four groups: (1) control, (2) ultrasound alone (ultrasound), (3) P-HY alone (P-HY), and (4) P-HY plus ultrasound (SDT). For the P-HY and SDT groups, the cells were incubated with 0.4 µg/mL P-HY for a 4 h drug-loading time in RPMI 1640 medium supplemented with 10% FBS.
For the control and ultrasound groups, an equivalent volume of medium was used to replace P-HY. The cells in the ultrasound and SDT groups were exposed to an ultrasound at a frequency of 1.0 MHz and an intensity of 0.5 W/cm 2 for 15 min. After the treatment, the cells were cultured in fresh medium for a further 6 h and then prepared for different analyses.
For inhibitory studies, 10 mM sodium azide (NaN 3 , Sigma, Aldrich, USA), mannitol (Beyotime Biotechnology, Inc., Beijing, China), 100 µg/mL superoxide dismutase (SOD, Beyotime Biotechnology, Inc., Beijing, China), 100 µg/mL catalase (CAT, Beyotime Biotechnology, Inc., Beijing, China), 1 mM N-acetyl cysteine (NAC, Sigma, Aldrich, USA), 20 µM z-VAD-FMK (z-VAD, BioVision Inc., USA), 0.5 µM cyclosporin A (CsA, Sigma, Aldrich, USA), 100 µM bongkrekic acid (BA, Sigma, Aldrich, USA) and 1 µM 4, 4'-diisothiocyanatostilbene-2,2'-disulfonic acid disodium (DIDS, Sigma, Aldrich, USA) were incubated together with P-HY for 4 h.
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8

Investigating Molecular Mechanisms in Oxidative Stress

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Dulbecco's modified Eagle's medium (DMEM) medium and fetal bovine serum (FBS) was purchased from GIBCO-BRL (USA). N-acetyl-L-cysteine (NAC), diphenylene iodonium (DPI), NaHS, and LPS (E. coli serotype 055:B5) were obtained from Sigma (St. Louis, MO). Carboxy-PTIO potassium salt (c-PTIO), catalase (CAT), and superoxide dismutase (SOD) were purchased from Beyotime (Beyotime Biotechnology, Jiangsu, China). LY294002 and SB203580 were obtained from Calbiochem (Dermstadt, Germany). Antibodies against β-Actin, CSE, iNOS, COX-2, Nox4 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Total-and phosphor (p) -p38 (Thr 180 and Tyr 182 ), total-and p-extracellular signal-regulated kinase 1/2 (ERK) (Thr 202 / Tyr 204 ), total-and p-Akt (Ser 473 ), and p-glycogen synthase kinase-3β (GSK3β) (Ser 9 ) were purchased from Cell Signaling Technology (Danvers, MA).
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