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7 protocols using axioplan 2ie microscope

1

Microscopic Analysis of CO2 Exposure Effects

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Full-scale images of the samples before and after tests were acquired with a Dino-Lite® Edge AM7915MZTL microscope (AnMo Electronics Corporation, Taipei, Taiwan) with an Open Cap N3C-O (9.5 mm length), varying Dino-Lite® lighting levels (Flexible LED Control) that were controlled through the DinoCapture 2.0 software (Almere, The Netherlands), at a magnification of approximately ×20 (scale is 2 mm).
Detailed images of the samples’ surfaces were acquired using an Axioplan 2ie microscope (Zeiss, Germany), equipped with an incident halogen light illuminator (tungsten light source, HAL 100) and coupled with a DXM1200F digital camera and ACT-1 control software (Nikon, Japan). Micrographs were captured within a few days of exposure to CO2 and again after 35 weeks, using reflected (incident) light in brightfield, darkfield, and cross-polarized modes, and transmitted light in cross-polarized mode, at varied magnifications (×50, ×100, ×200, and ×500).
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2

Live Imaging of Drosophila Imaginal Tissues

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Throughout the paper (except in Figure 2F–G’’’ and Figure 2—figure supplement 2A–E), live tissues were used for imaging. Live imaging of the Drosophila imaginal tissues was performed as previously described (Xu et al., 2019 (link)). Briefly, freshly dissected wing or eye imaginal discs from third instar larvae were pipetted into a ~40 μl droplet of Schneider’s Drosophila Medium supplemented with 10% fetal bovine serum and mounted on a glass slide. To support the tissue, spherical glass beads (Cospheric, Product ID: SLGMS-2.5) of ~50 μm in diameter were placed under the cover slip. The mounted samples were immediately imaged on Zeiss LSM 880 or LSM 800 confocal microscopes. Throughout the paper, apical tissue views were shown as maximum projections of the most apical optical sections (0.75 μm/section, four to five sections) generated using Image J; for basal views, single sections ~10.5 μm below the apical surface were shown. Widefield fluorescence imaging of live wing imaginal discs was done using a Zeiss Axioplan 2ie microscope with an Orca ER camera and Zeiss AxioVision software.
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3

Immunofluorescent Labeling of Kidney Cells

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Frozen section of OCT-embedded tissue was used for synaptopodin, CD44, nephrin, Claudin-1, mouse IgG, sheep IgG, and C3 complement immunofluorescent labeling. Cultured mPECs were fixed with 2% formaldehyde containing 4% sucrose for 10 min, then permeabilized with 0.3% Triton-X100 in PBS for 10 min. The following primary antibodies were used: rabbit-anti-Claudin-1, goat-anti-RARα, rabbit-anti-RARβ from Abcam (Cambridge, MA); rabbit anti-synaptopodin antibody from Dr. Peter Mundel (Massachusetts General Hospital, Boston, MA); mouse anti-synaptopodin antibody from Fitzgerald Industries International. Inc. (Acton, MA); rabbit anti-nephrin antibody from Dr. Larry Holzman (University of Pennsylvania, Philadelphia, PA); rabbit anti-Pax2 antibody from Invitrogen (Waltham, MA); rat anti-CD44 from eBioscience (San Diego, CA); anti-mouse IgG and anti-sheep IgG from Jackson ImmunoResearch Laboratories (West Grove, PA); After mounting, slides were examined by Zeiss Axioplan2IE microscope.
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4

Immunofluorescence Staining of Tissue Sections

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Frozen and/or paraffin sections were used for immunofluorescence staining as described previously 10 (link)13 (link) using the following primary antibodies: WT-1 (sc-192Santa Cruz Biotechnology), CD31 (BDB550274, BD Biosciences), cleaved PARP (#ab32064, Abcam), cleaved Caspase-3 (#9664, Abcam), 8-oxoG monoclonal antibody (N45.1; Japan Institute for the Control of Aging), LRG1 (13224-1-AP, Proteintech), GPR56 (MABN310, Millipore), and ZFP57 (ab45341, Abcam). Isolectin GS-IB4 (121413, Invitrogen) was also used to detect endothelial cells. Fluorescence images were acquired using the Axioplan 2 IE microscope (Zeiss).
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5

Immunofluorescent Staining and Quantification

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Staining, image acquisition, and fluorescence intensity quantification were performed as previously described. Frozen sections were incubated with Unconjugated AffiniPure Fab Fragment Goat Anti-Mouse IgG (H + L) (Jackson ImmunoResearch Labs, 115-007-003) for 1 h at room temperature after normal serum blocking, to eliminate background staining. Then, immunofluorescence staining was performed using the following antibodies: rabbit anti-WT1 (sc-192, Santa Cruz Biotechnology), mouse anti-SPP1 (secreted phosphoprotein), (MPIIIB10, Developmental Studies Hybridoma Bank), mouse anti-CARP/ANKRD1 (ankyrin repeat domain 1) (sc365056, Santa Cruz Biotechnology), and rabbit polyclonal Cleaved Caspase 3 (9664, Cell Signaling). Isolectin GS-IB4 (121413, Invitrogen) was also used to detect endothelial cells. Slides were counterstained with 4′,6-diamidino-2-phenylindole and mounted with the use of Vectashield hardset antifade mounting medium (Vectorlabs). Fluorescence images were acquired using the Axioplan 2 IE microscope (Zeiss).
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6

Muscle Fiber Morphometry Analysis

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Fluorescence images of muscle sections and muscle fibres were taken using a Zeiss AxioPlan 2ie microscope. Images of muscle sections were processed in Fiji (ImageJ) after being pixel corrected in Ilastik and the minimum Feret diameter was measured.
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7

Live Imaging of Drosophila Imaginal Tissues

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Live imaging of the Drosophila imaginal tissues was performed as previously described (Xu et al., 2019) . Briefly, freshly dissected wing or eye imaginal discs from third instar larvae were pipetted into a ~40µl droplet of Schneider's Drosophila Medium supplemented with 10% Fetal Bovine Serum and mounted on a glass slide. To support the tissue, spherical glass beads (Cospheric, Product ID: SLGMS-2.5) of ~50µm in diameter were place under the cover slip. The mounted samples were immediately imaged on Zeiss LSM 880 or LSM 800 confocal microscopes. Widefield fluorescence imaging of live wing imaginal discswas done using a Zeiss Axioplan 2ie microscope with an Orca ER camera.
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