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14 protocols using highscore software

1

Powder X-ray Diffraction Analysis of Samples

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XRD was performed on a Panalytical Empyrean Powder X-ray Diffractometer fitted with Bragg–Brentano HD optics, a sealed tube copper X-ray source (λ = 1.54178 Å), and a PixCel3D Medipix detector. The X-ray tube with a copper anode was operated at 45 kV and 40 mA. Dried samples were pulverized using an agate mortar and pestle and packed into a zero-background single crystal silicon sample holder, 16 mm wide and 0.25 mm deep. Each sample was measured for 30 min (5 scans at 6 min each) with a fixed mask of 4 mm, an antiscatter slit of 1/4°, and a divergence slit of 1/16°. The scattered intensities were measured over a 2θ angular domain from 4° to 40° θ at ambient conditions using the Panalytical Data Collector software (27 ).
Search/Match phase identification was performed using the HighScore software of Panalytical against the ICDD PDF4/Organics database (28 ). Rietveld refinements were performed against the models of the single crystal structure data sets using the HighScore software of Panalytical (29 ). If required, refinement of preferred orientation was included using a spherical harmonics model.
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2

Femoral Bone Mineral Crystallography

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Femora were dissected with equal number of left or right femora randomly selected for each group. Soft tissues were removed, and all specimens were cleaned. Femora were cut at the ends using a slow speed (150 rpm) diamond saw blade (Buehler Isomet 100, Lake Bluff, IL) and the shaft was washed free of blood. Dry specimens, i.e. the whole cortical shaft (200 mg), were then powdered using a mortar and pestle. X-ray diffraction (XRD) patterns were obtained using the Panalytical X’Pert Diffractometer (Malvern Panalytical, Malvern, United Kingdom) operated at 45 kV and 40 mA with Copper (Cu) Kα with wavelength λ = 1.5405980 Å. Diffractograms were taken from 20 to 55° in a 2θ scale with a 0.01° step size and 499 s step count. Diffractograms were then analyzed using the HighScore software (Malvern Panalytical, Malvern, United Kingdom), where background subtraction and smoothing was done prior to peak fitting (Figure 2). The diffraction peak of 002, related to the length of the c-axis, was analyzed. The d-spacing and full width half-maximum (FWHM) of the 002 peak was calculated, and the mineral crystal size was determined using the Scherrer equation, B = kλ/Lcosθ, as previously reported [58 (link)]–[61 (link)].
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3

Bone Mineral Crystallinity Analysis

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Humeri were dissected from the LFD mouse group (n=6) and HFD mouse group (n=6). Equal number of left or right humeri was randomly selected for each group (n=6: left humeri=3 and right humeri=3). Soft tissues were removed, and all specimens were cleaned. Humeri were cut at the ends using a slow speed (150 rpm) diamond saw blade (Buehler Isomet 100, Lake Bluff, IL) and the shaft was washed free of blood. Dry specimens were then powdered using a mortar and pestle. X-ray diffraction (XRD) patterns were obtained using the Panalytical X’Pert Diffractometer (Malvern Panalytical, Malvern, United Kingdom) operated at 45 kV and 40 mA with Copper (Cu) Kα with wavelength λ = 1.5405980 Å. Diffractograms were taken from 20 to 55° in a 2θ scale with a 0.01° step size and 499 s step count. Diffractograms were then analyzed using the HighScore software (Malvern Panalytical, Malvern, United Kingdom), where background subtraction and smoothing was done prior to peak fitting. The diffraction peak of 002, related to the length of the c-axis, was analyzed. The d-spacing and full width half-maximum (FWHM) of the 002 peak was calculated, and the mineral crystal size was determined using the Scherrer equation, B = kλ/Lcosθ, as previously reported [54 (link)–57 (link)].
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4

Wide-Angle X-Ray Diffraction Analysis

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An X−ray diffractometer (Philips X’PERT MPD, Malvern Panalytical Inc., Westborough, MA, USA) was used to obtain wide−angle XRD patterns. The ground samples were exposed to the radiation of Co Kα (0.179 nm) on the XRD machine. Using the HighScore software (Malvern Panalytical Inc., Westborough, MA, USA), data were converted to Cu Kα radiation−based 2θ values between 2θ = 5° and 30°.
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5

Multimodal Characterization of Electrode Microstructures

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Scanning
electron microscopy (SEM) was performed by using a Zeiss Sigma microscope
with a coupled Oxford Instruments energy dispersive X-ray spectroscopy
(EDS) detector. EDS was conducted and analyzed using Aztec software.
X-ray diffraction (XRD) was conducted using an Aeris desktop machine
with data analysis performed by means of Highscore software (Malvern
Panalytical). To understand the electrochemical trend observed in
terms of electrode microstructures, we performed an X-ray computerized
tomography (XCT) analysis of CMF electrodes. The CMF sample was scanned
on a ZEISS Vectra 520 for determining the surface microstructures
of interest. The specimen was scanned at a voltage of 80 kV, a power
of 7 W, an exposure time of 20 s, and a minimum of 10× over 1601
projections as reported previously.16 (link)
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6

Quantifying Powder Crystallinity via XRD

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The crystallinity of the powder samples was determined with an X’Pert PRO MPD PW3040/60 X-ray diffractometer (Malvern Panalytical, Malvern, UK) equipped with Cu Kα radiation. An aluminum holder was used to analyze the samples over a 2θ range of 5–35° at a rate of 2°/min. The PANalytical High Score software was used to analyze the diffractogram.
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7

Mg Degradation Surface Characterization

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The surface morphology and composition of Mg samples after 24-h immersion degradation under flow and static conditions were characterized using the scanning electron microscope (SEM, Nova NanoSEM 450, FEI Co., Hillsboro, OR, USA) with the attached detector for energy dispersive X-ray spectroscopy (EDS, Nova NanoSEM 450, FEI Co., Hillsboro, OR, USA, X-Max 450). The surface elemental composition and distribution were analysed using the EDS detector and the AZtecEnergy software (Oxford Instruments, Abingdon, Oxfordshire, UK). Elemental mapping combined with SEM was used for investigating the degradation products on Mg samples after 24-h immersion degradation under flow and static conditions while EDS point analysis was used for analysing specific features in the degradation layers. The SEM and EDS analyses were carried out at an accelerating voltage of 20 kV and the SEM images were obtained at an original magnification of 500 x and 5000x. The phases of Mg after 24-h immersion study under flow and static condition were analysed using X-ray diffraction (XRD; Empyrean, PANalytical) at 45 KV and 40 mA with 2θ angles from 10° to 80° at a step size of 0.002°. The diffraction peaks were identified based on the international center for diffraction data database using HighScore software (PANAlytical).
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8

X-ray Powder Diffraction Analysis

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Powder diffraction data were
collected using an X-ray diffractometer (Empyrean, Malvern Panalytical).
Powder samples were packed into zero-background silicon sample holders.
Antiscatter slits, divergence slits, and masks were chosen on the
basis of sample area and starting θ. Data were collected between
2θ of 24 and 32° using data collector software (Panalytical).
Search/Match phase identification was performed using HighScore software
(Panalytical) and ICCD PDF4+ database.
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9

Powder Diffraction and Thermal Analysis of Crystalline Materials

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Powder diffraction data were collected in focusing mode on a Panalytical Empyrean X-ray diffractometer equipped with Bragg–Brentano HD optics, a sealed-tube copper X-ray source (λ = 1.54178 Å), Soller slits on both the incident and receiving optics sides, and a PixCel3D Medipix detector. Samples were hand ground for 20 minutes using an agate mortar and pestle and packed in metal sample cups with a sample area 16 mm wide and 2 mm deep. 1/4° anti-scatter slits and 1/16° divergence slits as well as a 4 mm mask were chosen based on sample area and starting θ angle. Data were collected between 5 and 90° in 2θ using Data Collector software (PANalytical, 2019 ▸ ). Rietveld refinements were performed against the models of the single-crystal-structure data sets using the HighScore software (PANalytical, 2018 ▸ ). Refinement of preferred orientation was included using a spherical harmonics model.
Differential scanning calorimetry (DSC) and thermogravimetric analysis (TGA) data were measured using a TA Instruments Q20 DSC with heating rates of 5°C min−1. The sample was run in an alumina open pan from 25 to 100°C. The DSC and TGA traces are given in the Supporting Information (Fig. S3).
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10

Platinum Oxidation State Analysis

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XRD analyses were carried out to study the oxidation state of the Pt products obtained from the microbial reduction assays. The analyses were performed using a PANalytical X’pert Plus Instrument (Westborough, MA, USA) equipped with a programmable incident beam slit with the slit fixed at 2°, and an X’Celerator Detector. The X-ray radiation used was Cu Kα, λ = 1.5418 Å. The generator settings were 45 kV and 40 mA; scan step size of 0.017 from 10° to 80°. The samples were dried with He and scattered onto a zero-background plate (Si wafer) before the analysis. The obtained diffraction patterns were analyzed using the Panalytical High Score software and compared with patterns for crystalline platinum metal deposited in the ICDD database.
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