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E 109 spectrometer

Manufactured by Agilent Technologies

The E-109 spectrometer is a laboratory instrument designed to analyze the spectral characteristics of various samples. It is capable of measuring the absorption, emission, or reflectance spectra of materials across a range of wavelengths. The core function of the E-109 spectrometer is to provide precise and reliable spectral data for scientific research and analytical applications.

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9 protocols using e 109 spectrometer

1

EPR Spectroscopy Experimental Protocols

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CW-EPR and ST-EPR experiments were performed on a Varian E-109 spectrometer fitted with a two-loop one-gap resonator [106 (link), 107 (link)]. SR-EPR and Four-pulse DEER experiments were conducted on the Bruker ELEXSYS 580 spectrometer. Spectral simulations and DEER data analyses were carried out using the programs “MultiComponent” and “LongDistances”, respectively. The programs are available at https://www.biochemistry.ucla.edu/Faculty/Hubbell/software.html. Additional details in SI Materials and Methods.
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ESR Spectroscopy of Lipid Samples

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Lipid and L/P samples transferred to glass capillaries (1.5 mm I.D) were placed in a quartz tube. X-band (9.5 GHz) ESR experiments were carried out on a Varian E-109 spectrometer using 10-mW microwave power and 0.5- to 1.0-G field modulation amplitude. The center field was set to 3365 G, and the scan width was 100 to 140 G. The spectra were recorded with an acquisition time of 240 s using a time constant of 128 ms. The temperature was controlled by a homemade temperature control unit coupled to the spectrometer. ESR spectral analysis were carried out as previously described (39 (link)) using the Multicomponent LabVIEW (National Instruments) software developed by C. Altenbach (University of California, Los Angeles, CA). The effective order parameter, Szz, was calculated from the outer (2Amax) and inner (2Amin) hyperfine splitting values extracted from the 5-PCSL ESR spectra (58 ).
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EPR Spectroscopy Methods and Instrumentation

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Most X-band EPR spectra at 110 K were obtained with a Bruker EMX spectrometer located at the National Biomedical EPR Center at the Medical College of Wisconsin. Spectra were simulated with EasySpin.46 (link) Additional X-band spectra were obtained at 10 K with an Elexsys E500 EPR spectrometer, Bruker, Billerica, MA. Q-band spectra were obtained on a Varian E109 spectrometer. Low frequency spectra (S-band (3.5 GHz) and L-band (2.0 GHz) were obtained using home built bridges and resonators at the National Biomedical EPR Center.
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4

EPR Spectroscopy at Cryogenic Temperatures

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EPR experiments were performed on a Varian E109 spectrometer equipped with a cryogenic system, which allowed for low-temperature data collection. The spectrometer was operated at 9.26 GHz, with a modulation amplitude of 4 G and microwave power of 10 mW, at 70 K. Samples were drawn into quartz tubes and then frozen in liquid nitrogen. The EPR parameters were optimized to avoid line saturation and distortion. The spectrum of the buffer only was used as a baseline and subtracted from all other spectra.
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5

EPR Spectroscopy of Copper(II) Sulfate

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The X-band continuous-wave EPR spectra were recorded at 77 and 300K with a Varian E-109 spectrometer. The frequency of the spectrometer was calibrated with a 2,2-diphenyl-1-picrylhydrazyl (DPPH) standard sample. The weighted portion of copper(II) sulfate pentahydrate (CuSO4·5H2O) was used to evaluate the concentration of paramagnetic species. The EPR spectra were simulated in the MATLAB program package with the EasySpin toolbox [70 (link)].
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EPR Spectroscopy for ROS Detection

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The formation of ROS was measured by EPR spectroscopy using DMPO as a specific superoxide anion spin trap molecule and Tiron as a general spin trap22 (link)23 . Reaction mixture contained chloroplasts equivalent to 50 μg chlorophyll and 10 mM Tiron or 433 mM DMPO whereas in the experiments with MV its respective concentration was 10 mM. Immediately after admission of a specific spin trap, samples were either kept in the dark or illuminated with photosynthetic light of 100 μmol photons m−2 s−1 for 30 seconds. The experiments were performed in glass capillaries (inner diameter of 1 mm) on an X-band Varian E-109 spectrometer applying the following instrumental set-up: microwave power of 20 mW, modulation amplitude of 0.1 mT, modulation frequency of 100 kHz and scan range of 8 mT (DMPO) and 2.5 mT (Tiron). Data were collected using the supplied software43 at room temperature and analysed by EasySpin software package44 (link). In order to compare the EPR detected radical yield in trol versus WT plants, data related to mutant were normalized with respect to the WT data, which were taken as a referent ones and assumed to represent 100% radical yield. Similarly, when the samples were exposed to MV, the results were quantified with respect to the EPR signal of chloroplasts not exposed to MV, which were taken as a referent ones and assumed to represent 100% radical yield.
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X-band ESR Spectroscopy of Lipid and Lipid/Peptide Samples

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X-band (9.5 GHz) ESR experiments were performed at 30 °C on a Varian E-109 spectrometer. Lipid and lipid/peptide samples were transferred to glass capillaries (1.5 mm I.D.) and spun at 15,700 g for 15 min. The capillaries were immersed into a mineral oil bath in a quartz tube for the measurements. A homemade temperature control unit coupled to the spectrometer (accuracy of ~0.2 °C) controlled the temperature. The spectra were recorded with a modulation amplitude of either 0.5 or 1.0 G and a microwave power of 5 mW. Nonlinear least-squares (NLLS) fitting of selected ESR spectra was carried out using the Multicomponent LabView (National Instruments, Austin, USA) [48] , [49] as described elsewhere [38] (link), [50] (link).
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8

EPR Spectroscopy of Copper(II) Sulfate

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The X-band continuous-wave EPR spectra were recorded at 77 and 300 K with a Varian E-109 spectrometer. The frequency of the spectrometer was calibrated with a 2,2-diphenyl-1-picrylhydrazyl (DPPH) standard sample. The weighted portion of copper(II) sulfate pentahydrate (CuSO4·5H2O) was used to evaluate the concentration of paramagnetic species. The EPR spectra were simulated in the MATLAB program package with the EasySpin toolbox [39 (link)].
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9

CW EPR Sample Concentration and Measurement

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The typical sample concentration for our CW EPR studies was ∼100 μM. Approximately 20 μL of sample was utilized in each measurement. A Varian E-109 spectrometer fitted with a cavity resonator was used for all CW EPR studies.
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