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4 protocols using αcd8 percpcy5

1

Antibody Reagents for Immune Checkpoint Studies

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Anti (α)-mouse CTLA-4, α-mouse PD-L1, and mouse IgG2b isotype antibodies were purchased from BioXCell (West Lebanon, New Hampshire, US). Mouse α-CD4 APC, α-CD8 PerCP Cy5.5, α-PD-L1, and purified α-mouse CD3 were bought from BD Biosciences (San Jose, California, US). Mouse α-CD45 PE, α-PD1 FITC, α-TIM3 APC, and α-LAG3 APC were purchased from eBioscience and Biolegend (San Diego, California). α-mouse and α-human recombinant IFNγ was purchased from Peprotech (Rocky Hill, New Jersey, US).
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2

Single-Cell TCR Sequencing of Tetramer-Positive CD8+ T Cells

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Tetramer magnetic enrichment and single‐cell PCR were undertaken as previously described.37, 47 Briefly, PBMCs from HLA‐A*03:01+ individuals were FcR blocked (Miltenyi Biotech) in MACS buffer (phosphate‐buffered saline (PBS)), 0.5% bovine serum albumin (BSA; Sigma‐Aldrich); and 0.2 mm EDTA (Sigma‐Aldrich) for 15 min at 4°C. PBMCs were then stained with PE‐conjugated tetramer in MACS buffer for 1 h at room temperature, washed and labelled with anti‐PE microbeads (Miltenyi Biotech) at 4°C for 30 min. Epitope‐specific cells were enriched by passing twice over a LS magnetic column (Miltenyi Biotech) and surface stained with αCD3‐BV480 (BD Biosciences), αCD8‐PerCPCy5.5 (BD Biosciences), Live/Dead‐NIR (Life Technologies), αCD14‐APCH7 (BD Biosciences), αCD4‐APCH7 (BD Biosciences), αCD19‐APCH7 (BD Biosciences), αCD27‐BV711 (BD Biosciences), αCD45RA‐FITC (BD Biosciences), αCCR7‐PECy7 (BD Biosciences) and αCD95‐BV421 (BD Biosciences) at 4°C in the dark. Cells were resuspended in sort buffer (PBS, 0.1% BSA; Gibco, CA, USA), and tetramerhigh/CD8+ T cells were single‐cell sorted directly into Twin‐Tech PCR plates (Eppendorf, Hamburg, Germany) on an Aria Fusion (BD Biosciences) and were stored at −80°C until used. The gating strategy is shown in Supplementary figure 1c.
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PBMC Enrichment for Tetramer Analysis

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In all, 1–2 × 107 PBMCs from HLA-B*37:01+ donors were FcR blocked in MACS buffer (phosphate-buffered saline (PBS), 0.5% bovine serum albumin (BSA); Gibco, CA, USA, 0.2 nM EDTA; Ajax Finechem, NSW, Australia) for 15 min at 4 °C (Miltenyi Biotech, Bergisch Gladbach, Germany) and tetramer stained with variant-specific tetramers conjugated to PE in MACS buffer for 1 h at room temperature. Cells were washed, a small amount was removed for unenriched control, and labeled with anti-PE microbeads (Miltenyi Biotech, Bergisch Gladbach, Germany) for 30 min at 4 °C. Following washing, cells were enriched by passing twice over LS magnetic columns (Miltenyi Biotech, Bergisch Gladbach, Germany)30 (link),55 (link). Bound cells were eluted in MACS buffer. All samples (unenriched, enriched, and flow-through) were surface stained for 30 min with αCD3-PeCy7 (eBiosciences), αCD8-PerCPCy5.5 (BD Biosciences), Live/Dead-NIR (Molecular Probes), αCD14-APCH7 (BD Pharmingen), αCD4-APCH7 (BD Biosciences), αCD19-APCH7 (Biolegend), αCD27-APC (BD Biosciences) and αCD45RA-FITC (BD Pharmingen) at 4 °C in the dark. Lymphocytes were washed, re-suspended in sort buffer (PBS, 0.1% BSA; Gibco, CA, USA), and were acquired on the BD Aria III.
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4

Characterization of CD8+ T Cells

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CD8+ T cells were stained with tetramers for 1 h at room temperature in the dark. Cells were washed and surface stained for 30 min with αCD3-PeCy7 (1:50–1:100; eBiosciences #25-0038-42) or αCD3-PB (1:50–1:100; Biolegend #300431, SD, USA) with αCD8-PerCPCy5.5 (1:50; BD Biosciences #341051), αCD27-APC (1:50–1:100; BD Biosciences #337169), αCD45RA-FITC (1:50–1:100; BD Pharmingen #555488) and Live/Dead-NIR (1:1000; Molecular Probes #L10119) at 4 °C, then either fixed with 1% PFA (Electron Microscopy Sciences), and acquired on the BD FACS Canto II (BD Biosciences) or resuspended in sort buffer and single-cell sorted on the BD Aria III (BD Biosciences).
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