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Nuclear fast red

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Nuclear Fast Red is a histological stain used to detect nucleic acids in biological samples. It is a red dye that binds to DNA and RNA, allowing for the visualization of cellular structures under a microscope. This stain is commonly used in various applications, including tissue analysis, cytology, and histopathology.

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5 protocols using nuclear fast red

1

Histological Analysis of β-galactosidase Expression

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We used the inserted β-galactosidase/LacZ reporter gene to indicate the location of expression of each gene, as described previously (Buniello et al., 2016 (link); Chen et al., 2014 ). Inner ears were dissected from postnatal day (P)14 mice and fixed in 4% paraformaldehyde for 30–40 min with rotation at room temperature. Samples were washed with PBS twice for 20 min and decalcified in EDTA at 4 °C over 72 h. The inner ears were washed in detergent wash (2 mM MgCl2; 0.02% NP-40; 0.01% sodium deoxycholate in PBS, pH7.3) for 30 min at room temperature. X-gal (Promega, cat. no. V394A) was added 1:50 to pre-warmed staining solution (5 mM K3Fe(CN)6 and 5 mM K4Fe(CN)6 in detergent solution), and the samples were then incubated at 37 °C until each sample was deemed adequately stained. Following X-gal staining, the samples were washed with PBS, dehydrated and embedded in paraffin wax. The samples were sectioned at 8  μm, counterstained using Nuclear Fast Red (VWR, cat. no. 342094W) and mounted using Eukitt quick-hardening mounting medium (Sigma-Aldrich) before being viewed and photographed using a Zeiss Axioskop microscope connected to an AxioCam camera and interfaced with Axiovision 3.0 software.
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2

Prussian Blue Staining of Nanoparticle Uptake

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To verify internalization of unlabeled nanoparticles, cells were stained with Prussian Blue and counterstained with nuclear fast red. Briefly, cells were fixed with 4% paraformaldehyde (PFA; AppliChem, Darmstadt, Germany) for 10 min at room temperature (RT) and washed twice with phosphate buffered saline (PBS; Biochrom, Berlin, Germany). Cells were incubated for 20 min in a mixture of 1% HCl (Carl Roth, Karlsruhe, Germany) and 2% potassium ferrocyanide (AppliChem) at equal volumes, washed twice with PBS and counterstained using 1% nuclear fast red (VWR International GmbH) in 5% aqueous aluminium sulfate (AppliChem) solution for 20 min. Cells were washed twice with PBS and once with distilled water. Finally, cells were embedded in mounting medium consisting of 12% poly(vinyl alcohol) (w/v; Sigma-Aldrich Chemie GmbH), 30% glycerol anhydrous (w/v; AppliChem), 0.53 mM phenol (Sigma-Aldrich Chemie GmbH) and 60 mM TRIS (pH 8.5; AppliChem). After polymerization of mounting medium, stained cells were investigated using the microscope Zeiss Axiovert 40 CFL (Carl Zeiss Microscopy GmbH, Jena, Germany).
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3

Whole-Mount X-Gal Staining of Mouse Inner Ear

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Heads from mice aged 4 weeks were bisected through the midline, the brain removed, and semicircular canal opened, then fixed in 4% paraformaldehyde at RT for 90 minutes. After decalcification in EDTA, the samples were washed for 30 minutes at RT with rotation with the detergent solution (2 mM MgCl2; 0.02% NP-40; 0.01% sodium deoxycholate; 0.01% sodium deoxycholate in PBS, pH 7.3). X-gal (Promega, cat. no. V394A) was added 1:50 to prewarmed staining solution (5 mM K3Fe(CN)6 and 5 mM K4Fe(CN)6 in detergent solution), and then the samples were stained at 37°C in the dark overnight. The half-skulls were then washed twice with saline at 4°C in rotation for at least 2 hours and stored at 4°C in 70% ethanol until tissue processing and embedding. The samples were gradually dehydrated in ethanol (Leica TP1020 tissue processor) and embedded in paraffin using xylene as clearing agent (Leica EG1150H tissue embedder). The samples were cut at 8 μm thick, counterstained with Nuclear Fast Red (VWR, cat. no. 342094W), and mounted with Eukitt mounting medium (Sigma-Aldrich). Specimens were imaged using a Zeiss Axioskop microscope connected to an AxioCam camera and interfaced with Axiovision 3.0 software.
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4

Visualizing Retinoic Acid Signaling

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To evaluate the tissue distribution of RA signaling, embryos were stained for β–galactosidase activity as whole-mount specimens, imaged and then processed and embedded in paraffin for sectioning. E10.5 RARE-lacZ reporter mouse embryos were harvested into ice cold PBS and fixed whole mount in 2% formalin plus 0.2% glutaraldehyde for 75 min on ice. After fixation, embryos were rinsed with β-galactosidase tissue rinse solution A (Millipore, #BG-6-G), then washed in solution A for 30 min at room temperature. Embryos were next rinsed with β-galactosidase tissue rinse solution B (Millipore, #BG-7-G) and washed in solution B for 5 min at room temperature. Fixed embryos were then drained and placed in stain solution: β-galactosidase tissue stain base solution (Millipore, #BG-8C) plus 1 mg/ml X-gal (Sigma-Aldrich, #B4252-250MG). Embryos were stained overnight at room temperature protected from light, then post-fixed in 4% paraformaldehyde overnight. Sections were counterstained with Nuclear Fast Red (VWR, #JTS635-1). After whole-mount imaging, embryos were processed into paraffin and sectioned.
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5

X-Gal Staining of Inner Ears in Synj2 Mice

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Inner ears of 4-week-old Synj2tm1b mice were fixed in 4% paraformaldehyde for 2 h in rotation at room temperature (RT), washed twice with PBS for at least 30 min and decalcified in 0.1 M EDTA in rotation at RT until the bone was sufficiently soft (usually 2 or 3 days). The samples were washed for 30 min with a detergent solution (2 mM MgCl2; 0.02% NP-40; 0.01% sodium deoxycholate in PBS, pH 7.3). X-gal (Promega, cat.no. V394A) was added 1:50 to pre-warmed staining solution (5 mM K3Fe(CN)6 and 5 mM K4Fe(CN)6 in detergent solution), then the inner ears were stained at 37°C in the dark overnight. Following X-gal staining, the samples were washed with PBS, dehydrated, and embedded in paraffin wax. The samples were sectioned at 8 μm, counterstained using Nuclear Fast Red (VWR, cat.no. 342094W) and mounted using Eukitt quick-hardening mounting medium (Sigma–Aldrich). The sections were imaged using a Zeiss Axioskop microscope connected to AxioCam camera and interfaced with Axiovision 3.0 software.
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