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5 protocols using mir 148a 3p mimic

1

Transient Transfection and Gene Silencing Methods

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For transient transfection of miRNAs, Cells were seeded at 1 × 105 per well in 12‐well plates and cultured for 24 h. Cells were transfected with miR‐148a‐3p mimics (GenePharma, Shanghai, China), or the negative controls at a final dose of 25, 50 nM, using Lipofectamine RNAiMAX transfection reagent (Invitrogen, USA) and in serum‐free Opti‐MEM medium (GIBCO, USA). After 6 h, the medium was replaced with RPMI containing 1% penicillin/streptomycin and 10% FBS.
For silencing specific gene expression, the synthesis of siRNAs was completed by GenePharma company, and transfection of siRNAs targeting ATP7A, ALCAM, NRP1, SMAD2, and SPIN1, as well as nontargeting control was carried out according to the previous protocol of miR‐148a‐3p. Total RNAs and proteins were extracted after 48 h of transfection. Knockdown efficiency of ATP7A was measured using Q‐PCR and western blot. While, the knockdown efficiency of other genes was assessed by PCR.
For enforced expression of ATP7A, ATP7A open reading frame was amplified to the pcDNA3.1(+) expression vector, and the empty plasmid pcDNA3.1(+) was used as a control. Lipofectamine 2000 (Invitrogen) was utilized to transfect the above plasmids into cells. The sequences of siRNA or detection primers are listed in Supporting Information Materials and Figure legends.
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2

Alzheimer's Disease Cell Model

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SH-SY5Y cells (ATCC, Manassas, VA, USA) transfected with the Swedish mutant form of human APP, named APPswe cells, are an established cell model of AD in which copper triggers Aβ overproduction.55 (link), 56 (link), 57 (link) They were cultured in Dulbecco's modified Eagle medium/nutrient mixture F-12 (DMEM/F12) supplemented with 2 mM L-glutamine, 10% fetal bovine serum (FBS; Gibco/Invitrogen, Grand Island, NY, USA), and 400 μM G418 (Sigma Chemical Co., St. Louis, MO, USA). miR-148a-3p mimics, antisense miR-148a-3p oligonucleotides (anti-miR-148a-3p), and scrambled controls were synthesized by GenePharma (Shanghai, China). pCMV-PTEN, pCMV-myr-Akt1, and pCMV-CREB were purchased from OriGene (Beijing, China) and transfected at a final concentration of 2 μg/mL. siRNAs for PTEN, Akt1, and CREB1 were obtained from Cell Signaling Technology (Danvers, MA, USA) and transfected at a final concentration of 100 nM. Cells were plated in culture plates 24 h before transfection. All plasmids were transfected transiently using Lipofectamine 3000 (Invitrogen).
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3

Modulation of miR-148a-3p in Macrophages

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RAW264.7 cells were randomly divided into NC (miR mimic) group, miR mimics group, NC (miR inhibitor) group, miR inhibitor group, LPS + NC (miR mimic) group, LPS + NC (miR inhibitor) group, LPS+ miR inhibitor group and LPS + miR mimics. The MiR-148a-3p mimic, miR-148a-3p inhibitor and their negative controls were transfected into RAW264.7 macrophages using Lipofectamine 2000 Transfection Reagent (Invitrogen, USA) according to the manufacturer's instructions. Twenty-four hours after transfection, cells were used for further experiments. MiR-148a-3p mimic and its negative control miR-NC, miR-148a-3p inhibitor and its negative control miR-NC were purchased from Shanghai GenePharma Co. The cells were collected 4 h later for LPS (1 μg/mL) stimulation for RT-PCR and 24 h for western blotting.
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4

Binding Analysis of HOTAIR and miR-148a-3p

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The potential binding sites of lncRNA HOTAIR and miR-148a-3p were predicted using RNA22 v2 (https://cm.jefferson.edu/rna22/Interactive/) 24 (link) . The potential binding sites of miR-148a-3p and kruppel-like factor 6 (KLF6) were predicted using starBase (http://starbase.sysu.edu.cn/index.php) 25 (link) . The wild type (wt) and mutant type (mut) sequences of HOTAIR and KLF6 were cloned to pmiR-GLO luciferase vector (Promega, Madison, WI, USA) to construct HOTAIR-wt, KLF6-wt and HOTAIR-mut and KLF6-mut. HEK293T cells (Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China) were transferred with the constructed plasmids and mimic NC and miR-148a-3p mimic (GenePharma), respectively using lipofectamine 3000 (Thermo Fisher Scienti c). Luciferase activity was detected after 48 h by the Dual-Luciferase Reporter Assay kit (Vazyme, Nanjing, China) following the manufacturer's instructions.
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5

Binding Analysis of HOTAIR and miR-148a-3p

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The potential binding sites of lncRNA HOTAIR and miR-148a-3p were predicted using RNA22 v2 (https://cm.jefferson.edu/rna22/Interactive/) 24 (link) . The potential binding sites of miR-148a-3p and kruppel-like factor 6 (KLF6) were predicted using starBase (http://starbase.sysu.edu.cn/index.php) 25 (link) . The wild type (wt) and mutant type (mut) sequences of HOTAIR and KLF6 were cloned to pmiR-GLO luciferase vector (Promega, Madison, WI, USA) to construct HOTAIR-wt, KLF6-wt and HOTAIR-mut and KLF6-mut. HEK293T cells (Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai, China) were transferred with the constructed plasmids and mimic NC and miR-148a-3p mimic (GenePharma), respectively using lipofectamine 3000 (Thermo Fisher Scienti c). Luciferase activity was detected after 48 h by the Dual-Luciferase Reporter Assay kit (Vazyme, Nanjing, China) following the manufacturer's instructions.
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