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Sybr green pcr master mix

Manufactured by GenePharma

SYBR Green PCR Master Mix is a ready-to-use solution containing all the necessary components for real-time polymerase chain reaction (PCR) amplification and detection using the SYBR Green fluorescent dye. The master mix includes DNA polymerase, dNTPs, buffer, and SYBR Green I.

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4 protocols using sybr green pcr master mix

1

Quantifying RNA Expression in Cell Cultures

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Total RNA was extracted using an RNA kit and protocol (GenePharma Co., Ltd., Shanghai, China). mRNA contained in 2 µg total RNA was reverse transcribed using a Transcriptor strand cDNA synthesis kit (GenePharma Co., Ltd.). PCR amplification was performed using a SYBRGreen PCR Master Mix (GenePharma Co., Ltd.) and the primers listed subsequently (Integrated DNA(deoxyribonucleic acid) Technologies [IDT], 300 nM). mRNA abundance was quantified using the threshold cycle method.
Collagen I: 5′-TGCTGCCTTTTCTCTCCTT-3′, 5′-AAGTGCTGGTAGGGAAT-3′;
Runx2: 5′-TGCTGGAGTGATGTGGTTTTCT-3′, 5′-CCCCTGTTGTGTTGTTTGGTAA-3′;
Aggrccan: 5′-GCATCCGAAACCCTGTAAC-3′, 5′-GGCGGTCAGCATCATAGTCC-3′;
OPN: 5′-CAAATACCCAGATGCTGTGGC-3′, 5′-TCCTGGCTGTCCACATGGAC-3′;
IRKA4: 5′-ACTTCTTGTACGAGGTGCCGCC-3′, 5′-GGGCAGGCCTGGGTCTGGCAGT-3′;
IKKα: 5′-CCGCTCGAGATGGACCGTTGCTACGATCC-3′, 5′-GGGGTACCTCAGTGCACCTGAGGCTG-3′;
IKKβ: 5′-GCCAGAAAACATCGTCCT-3′, 5′-CACCGTTCCATTCAAGTC-3′; and
NF-κB: 5′-GGAGGCATGTTCGGTAGTGG-3′, 5′-CCCTGCGTTGGATTTCGTG-3′.
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2

Quantification of PKM2 Expression

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Protein lysates were separated on Bis-tris 4–12% gels (Life Technologies) and transferred to a nitrocellulose membrane (Life Technologies). Protein detection was performed using anti-PKM2 (Cell Signaling Technology, cat# 4053S) and anti-β-actin (Sigma-Aldrich, cat# A5316). All immunoblots are cropped for viewing. Total RNA was extracted using Trizol (Life Technologies) according to the manufacturer’s protocol. cDNA was synthesized using High Capacity cDNA Reverse Transcription Kit (Life Technologies). Gene expression was quantified by quantitative real-time transcription-polymerase chain reaction (qRT-PCR) using CFX384 Real Time System (BioRad) and SYBR Green PCR Master Mix (GenePharma). Gene expression levels were normalized to β-actin. The relative gene expression levels were detected and calculated using the ΔΔCt comparative method. The RT-PCR primer sequences are as follows: PKM2, 5′- ACTGTCCTCACCAAGTCTGG-3′ (forward) 5′-GAAGATGCCACGGTACAGGT-3′ (reverse); β-Actin, 5′-TTGTTACAGGAAGTCCCTTGCC-3′ (forward) 5′-ATGCTATCACCTCCCCTGTGT-3′ (reverse).
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3

Quantifying miR-181b Expression

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RNA was extracted from cells or tissues using TRIzol (Invitrogen). miR-181b (qRT-PCR) reactions were performed using Fermentas reverse transcription reagents and SYBR Green PCR Master Mix (GenePharma) according to manufacturer's protocols. U6 was used for normalisation. Relative gene expression was calculated by the 2−∆∆Ct method.
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4

Gene Expression Analysis of HN1 and HMGB1

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Total RNA was extracted using Trizol reagent (Invitrogen, USA) according to the manufacturer's protocol. Then the cDNA was obtained by using EasyQuick RT MasterMix kit (cw2019s, CWBIO, China). Then qRT-PCR was performed using CFX384 Real Time System (BioRad) and SYBR Green PCR Master Mix (GenePharma). The expression level of GAPDH was endogenous control to normalize that of target genes. The 2 - ΔΔCt method was calculated to compare the corresponding gene expression level. The primers were presented as followed: human HN1: 5'-ATAGCTCCCGAGTTTTGCGG-3' (forward), 5'-GCCACCACTAGACTTGGCAC-3' (reverse); human HMGB1: 5'-GGGTACTGCCTTGCTTGACA-3' (forward), 5'-TCCCAAGTTGTGGCAAGTGT-3' (reverse); human GAPDH: 5'-TCCTGCACCACCAACTGCTT-3' (forward); 5'-GAGGGGGCCATCCACGTCTT-3' (reverse).
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