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6 protocols using anti rabbit igg cy5

1

Immunoblotting Analysis of γH2AX

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Whole-cell extracts were prepared by freeze and thaw lysis (three cycles) in 600 mM NaCl, 20 mM Tris-HCl pH 7.8, 20% glycerol. After SDS–PAGE, proteins were transferred onto PVDF membrane in semi-dry conditions. The membrane was then blocked in 5% non-fat dry milk buffer and incubated with mouse anti-γH2AX (Clone JBW301, Upstate, 1:5,000). Immunoblots were stained with corresponding HRP-conjugated secondary antibodies (GE Healthcare, 1:20,000) and detected with the enhanced chemiluminescence detection system (Amersham Biosciences). Quantification was performed using ImageJ.
For the validation of antibody specificity and cross-reactivity, a dilution series of synthetic peptides (CKATQASQEY; Peptide Specialty Laboratories GmbH), with the underlined serine in either phosphorylated or non-phosphorylated form, was immobilized on a nitrocellulose membrane at the indicated concentrations and probed with anti-γH2AX and anti-H2AX as described above.
CTCF knockdown western blots were developed using a rabbit anti-CTCF (#D31H2, Cell Signaling, 1:700) and a mouse anti-actin (AC-40, Sigma-Aldrich, 1:1,000) and overnight incubation at 4 °C, followed by a direct immunofluorescence detection using anti-rabbit-IgG-Cy5 (#711-175-152, Jackson, 1:1,000) and an anti-mouse-IgG-Alexa488 (A11029, Invitrogen, 1:1,000). Images were recorded using a AI600 Imager (Amersham) and quantified using ImageJ.
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2

Immunostaining of Polycomb Proteins

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Rabbit polyclonal antiserum was raised against bacterially expressed polypeptides carrying the C-terminal region of Pc, the N-terminal region of E(z) or the N-terminal region of Pho. Immunoblot data using these antibodies are shown in Fig. S6. Immunostaining of imaginal discs was carried out as described previously (Liu et al., 2003 (link)). Antibodies were used at the following dilutions: anti-Pc (1:1000), anti-E(z) (1:1000), anti-Pho (1:1000), anti-Ubx (Developmental Studies Hybridoma Bank; 1:1000), anti-Mbf1 (Jindra et al., 2004 (link); 1:500), goat anti-rabbit IgG or anti-mouse IgG Alexa488 (Molecular Probes, A72731 and A32723; 1:2000) and anti-rabbit IgG-Cy5 (Jackson ImmunoResearch, 111-225-144; 1:500). Images were acquired with an LSM510 META confocal microscope (Zeiss).
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3

Western Blot Analysis of p53 and Actin

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HaCaT and HaSKpwC7 cells were harvested and lysed in RIPA buffer. Protein concentration was determined by 660 nm Protein Assay (Pierce). Indicated amounts were loaded. After separation on a 12% PAA-SDS gel, the bands were visualized using mouse-anti-actin (clone AC-40, 1:2,000) and rabbit-anti-p53 (Cell signalling, #9282, 1:1,000) followed by anti-mouse-IgG-Cy3 and anti-rabbit-IgG-Cy5 (both Jackson ImmunoResearch, 1:3,000).
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4

Immunocytochemistry of hPSC Colonies

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hPSC colonies were fixed in 4% paraformaldehyde and permeabilized for 2 hours (PBS w/o Ca/Mg, 1% BSA, 3%FCS, 0.1% TritonX100) before primary staining overnight with OCT3/4 (SantaCruz 1:200; Secondary stain Cy5 anti-Rabbit IgG 1:1000 Jackson Labs).
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5

Quantifying Neutrophil Extracellular Trap Formation

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For NET analysis, 40,000 polymorphonuclear neutrophils were plated on poly-L-lysine–coverslips in a 24-well plate for 15 min at 37°C, and unbound cells were washed off with PBS. Each well was incubated with 500 μl of 0.1 μg immune complexes as described above for 2–3 h at 37°C. Cells were fixed with 4% paraformaldehyde for 15 min at room temperature, washed in PBS, and blocked overnight in 2 mM EDTA PBS containing 10% FBS, 1% BSA, and 0.05% Tween 20 at 4°C. Cells were sequentially stained with the following antibodies: mouse anti-neutrophil elastase (MABS461; Millipore) at 1:250, Cy3 anti-mouse IgG (Jackson ImmunoResearch) at 1:1,000, rabbit anti-histone H3 (Ab5103; Abcam) at 1:250, and Cy5 anti-rabbit IgG (Jackson ImmunoResearch) at 1:1,000. Cells were then stained with Hoechst 33342 (Thermo Fisher) at 1:100 for 10 min at room temperature, and ProLong Gold Antifade Mountant (Thermo Fisher) was added along with coverslips. A Leica TCS SP8 confocal microscope using the 40× immersion lens was used to obtain images. NETs were quantified by measuring the area of Hoechst staining (square millimeter) per cell in ImageJ. For each condition per donor plasma, four images were recorded, four cells were measured per image, and the average area per image was plotted.
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6

Immunofluorescence Analysis of Synaptotagmin-1 and F-Actin in Oocytes

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Oocytes were fixed, permeabilized and blocked according to previous methods, then incubated with rabbit anti-Syt1 antibody (Abcam; 1:200), mouse polyclonal anti-F-actin-FITC (Sigma;1:100), respectively, overnight at 4°C. After three washes with PBS containing 0.1% Tween 20 and 0.01% Triton X-100 for 5 min each, the oocytes were labelled with Cy5-anti-rabbit IgG (Jackson; 1:100) for 1 h at room temperature and then washed three times with PBS containing 0.1% Tween-20 and 0.01% Triton X-100. Propidium iodide (PI) was used to detect DNA. Finally, the oocytes were examined with a confocal laser scanning microscope (Zeiss LSM 510 META or Zeiss LSM 710 META, Germany).
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