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10 protocols using rabbit anti hmgb1 polyclonal antibody

1

Immunohistochemical Assessment of HMGB1 Expression

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Immunohistochemical (IHC) staining procedure was performed as previously described [22 (link)]. Tissue sections were incubated overnight in rabbit anti-HMGB1 polyclonal antibody (1:300, Abcam, Cambridge, U.K.) at 4°C and incubated with an anti-rabbit secondary antibody (1:1000, Abcam, Cambridge, U.K.) for 30 min at 37°C on the following day. Based on the staining intensity and the proportion of positive cells, IHC scores for HMGB1 were measured by two pathologists with no prior knowledge of clinicopathological results, and any discrepancies in scores were discussed until a consensus was reached. Five visual field (10*40) were chosen randomly and every case was scored by combining intensity points and proportion points. Proportion of positive cells were classified into four categories: 1 point (≤25%), 2 points (26–50%), 3 points (51–75%), and 4 points (>75%). Then the intensity of nuclear or cytoplasmic staining were scored as follows: weak staining detectable above background scored 1, moderate staining scored 2, and strong staining scored 3. We took the mean scores, which combined intensity points with proportion points of five visual fields as the final scores. Cases with final scores over 4 were regarded as high expressions of HMGB1
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2

Western Blot Analysis of Retinal HMGB1

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Western blot analyses were performed on retinal extracts of the retina, which were homogenized in ice-cold lysis buffer (1% sodium dodecyl sulfate, 1.0 mM sodium orthovanadate, 10 mM Tris, pH 7.4). Aliquots of lysed tissue, each containing 50 μg of total protein were heated at 100°C for 10 min with an equivalent volume of 2× sample buffer and were loaded onto 10% polyacrylamide gels. Proteins were electrophoresed and subsequently blotted onto a polyvinylidene fluoride membrane. The membrane was blocked with 5% non-fat dry milk dissolved in 0.01 M PBS (pH 7.4) containing 0.05% Tween-20 for 1 h at room temperature. The membrane was then incubated for 15 h at 4°C with rabbit anti-HMGB1 polyclonal antibody (1:1000; Abcam) in blocking solution. The membrane was rinsed 3 times with PBS containing 0.05% Tween-20 (10 min per wash), and was then incubated with peroxidase-conjugated donkey anti-goat IgG antibody (1:1000; Jackson ImmunoResearch) for 2 h at room temperature. Blots were developed using the Enhanced Chemiluminescence Detection Kit (Amersham, Arlington Heights, IL, United States) and densitometry was performed using the Eagle Eye TMII Still Video System (Stratagene, La Jolla, CA, United States).
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3

HMGB1 Protein Immunoblot Analysis

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Purified HMGB1 and desHMGB1 were subjected to SDS-PAGE with 5–20% or 10–20% acrylamide gradient gels (ATTO Corporation), transferred to nitrocellulose membranes (GE Healthcare), blocked with Block Ace (DS Pharma Biomedical), and incubated with rabbit anti-HMGB1 polyclonal antibody (18256; Abcam) or mouse anti-desHMGB1 monoclonal antibody at 4 °C overnight. Next, the membranes were washed with Tris-buffered saline containing 0.02% Tween-20, and then incubated with horseradish peroxidase-conjugated secondary antibodies (GE Healthcare) followed by detection with the Immobilon Western Chemiluminescent detection system (Merck Millipore).
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4

HMGB1 Protein Quantification Protocol

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Tissue total proteins were extracted using the total protein isolation kit (Solarbio, Beijing, China), according to manufacturers' instructions. Proteins were quantified using the Nanodrop 1000 (Thermo Scientific, Wilmington, Del.). Samples were denatured at 100°C for five minutes. Equal protein concentrations were loaded onto 12% SDS-PAGE gels and transferred to polyvinylidene fluoride membranes (Millipore Corporation, Billerica, Mass.). Membranes containing proteins were blocked in 5%
BSA and incubated with rabbit anti-HMGB1 polyclonal antibody (1:1,000, Abcam, U.S.A), followed by incubation with horseradish peroxidase-linked secondary antibodies (1:5,000; Golden Bridge Biotech Co. Ltd, Beijing, China). For standardization and expression comparisons, the membranes were also hybridized with a primary anti-β-actin antibody (1:1,000; Wuhan Boster Biological Technology, Wuhan, China). The bands appearing on film were analyzed with GeneTools software (Syngene, Frederick, Md).
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5

HMGB1 Quantification by ELISA

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The recombinant HMGB1 (rHMGB1, Novoprotein, Shanghai, China) series concentrations, ranging from 15.625 ng/ml to 1 μg/ml, and serum diluted with PBS (1∶ 8) from patients or mice, were incubated overnight in 96-well plates at 4°C. Plates were then washed five times in PBS Tween-20 buffer (PBST; 0.05% Tween-20 in PBS). This step was performed after each incubation period. The plates were blocked for two hours at 37°C using 3% bovine serum albumin (BSA) in PBST. After this, rabbit anti-HMGB1 polyclonal antibody (1:1,500, Abcam, U.S.A), diluted in PBS buffer containing 2% skimmed milk, was added to all wells and incubated for two hours at 37°C. The plates were then incubated for one hour at the same temperature, with anti-IgG rabbit antibody conjugated to horseradish peroxidase (1:5,000, Golden Bridge Biotech Co Ltd, Beijing, China). After washing, tetramethylbenzidine (Abcam, U.S.A) was added to each well and plates were incubated in the dark for 10-20 minutes at 37°C. Reactions were monitored by measuring the absorbance at 460 nm (Thermo, U.S.A). All assays were run in duplicate on each test plate.
TNF-α and IL-6 levels were assessed using commercial ELISA kits (4A Biotech Co., Ltd, Beijing, China).
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6

HMGB1 Quantification by ELISA

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The recombinant HMGB1 (rHMGB1, Novoprotein, Shanghai, China) series concentrations, ranging from 15.625 ng/ml to 1 μg/ml, and serum diluted with PBS (1∶ 8) from patients or mice, were incubated overnight in 96-well plates at 4°C. Plates were then washed five times in PBS Tween-20 buffer (PBST; 0.05% Tween-20 in PBS). This step was performed after each incubation period. The plates were blocked for two hours at 37°C using 3% bovine serum albumin (BSA) in PBST. After this, rabbit anti-HMGB1 polyclonal antibody (1:1,500, Abcam, U.S.A), diluted in PBS buffer containing 2% skimmed milk, was added to all wells and incubated for two hours at 37°C. The plates were then incubated for one hour at the same temperature, with anti-IgG rabbit antibody conjugated to horseradish peroxidase (1:5,000, Golden Bridge Biotech Co Ltd, Beijing, China). After washing, tetramethylbenzidine (Abcam, U.S.A) was added to each well and plates were incubated in the dark for 10-20 minutes at 37°C. Reactions were monitored by measuring the absorbance at 460 nm (Thermo, U.S.A). All assays were run in duplicate on each test plate.
TNF-α and IL-6 levels were assessed using commercial ELISA kits (4A Biotech Co., Ltd, Beijing, China).
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7

Western Blot Analysis of HMGB1 Protein

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Tissue total proteins were extracted using the total protein isolation kit (Solarbio, Beijing, China), according to manufacturers' instructions. Proteins were quanti ed using the Nanodrop 1000 (Thermo Scienti c, Wilmington, Del.).
Samples were denatured at 100 °C for ve minutes. Equal protein concentrations were loaded onto 12% SDS-PAGE gels and transferred to polyvinylidene uoride membranes (Millipore Corporation, Billerica, Mass.). Membranes containing proteins were blocked in 5% BSA and incubated with rabbit anti-HMGB1 polyclonal antibody (1:1,000, Abcam, U.S.A), followed by incubation with horseradish peroxidase-linked secondary antibodies (1:5,000; Golden Bridge Biotech Co. Ltd, Beijing, China).
For standardization and expression comparisons, the membranes were also hybridized with a primary anti-β-actin antibody (1:1,000; Wuhan Boster Biological Technology, Wuhan, China). The bands appearing on lm were analyzed with GeneTools software (Syngene, Frederick, Md).
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8

HMGB1-Induced Cytokine Response Evaluation

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The recombinant HMGB1 (rHMGB1, Novoprotein, Shanghai, China) series concentrations, ranging from 15.625 ng/ml to 1 µg/ml, and serum diluted with PBS (1∶8) from patients or mice, were incubated overnight in 96-well plates at 4 °C. Plates were then washed ve times in PBS Tween-20 buffer (PBST; 0.05% Tween-20 in PBS). This step was performed after each incubation period. The plates were blocked for two hours at 37 °C using 3% bovine serum albumin (BSA) in PBST. After this, rabbit anti-HMGB1 polyclonal antibody (1:1,500, Abcam, U.S.A), diluted in PBS buffer containing 2% skimmed milk, was added to all wells and incubated for two hours at 37 °C. The plates were then incubated for one hour at the same temperature, with anti-IgG rabbit antibody conjugated to horseradish peroxidase (1:5,000, Golden Bridge Biotech Co Ltd, Beijing, China). After washing, tetramethylbenzidine (Abcam, U.S.A) was added to each well and plates were incubated in the dark for 10-20 minutes at 37 °C. Reactions were monitored by measuring the absorbance at 460 nm (Thermo, U.S.A). All assays were run in duplicate on each test plate.
TNF-α and IL-6 levels were assessed using commercial ELISA kits (4A Biotech Co., Ltd, Beijing, China).
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9

HMGB1 Protein Quantification Protocol

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Tissue total proteins were extracted using the total protein isolation kit (Solarbio, Beijing, China), according to manufacturers' instructions. Proteins were quantified using the Nanodrop 1000 (Thermo Scientific, Wilmington, Del.). Samples were denatured at 100°C for five minutes. Equal protein concentrations were loaded onto 12% SDS-PAGE gels and transferred to polyvinylidene fluoride membranes (Millipore Corporation, Billerica, Mass.). Membranes containing proteins were blocked in 5%
BSA and incubated with rabbit anti-HMGB1 polyclonal antibody (1:1,000, Abcam, U.S.A), followed by incubation with horseradish peroxidase-linked secondary antibodies (1:5,000; Golden Bridge Biotech Co. Ltd, Beijing, China). For standardization and expression comparisons, the membranes were also hybridized with a primary anti-β-actin antibody (1:1,000; Wuhan Boster Biological Technology, Wuhan, China). The bands appearing on film were analyzed with GeneTools software (Syngene, Frederick, Md).
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10

HMGB1 Quantification in Diaphragm Muscle

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The levels of HMGB1 in the diaphragm muscle were assayed by Western blot analysis. Briefly, protein extracts were resolved on 12 % SDS-polyacrylamide gels, then transferred onto poly(vinylidene fluoride) microporous membranes (Millipore, Bedford, MA, USA), blocked with 5 % skim milk, and probed with rabbit anti-HMGB1 polyclonal antibody (1:300; Abcam, San Diego, CA, USA) and anti-β-actin antibody (1:1000; Santa Cruz Technology, Santa Cruz, CA, USA) for 4-5 h. The blot was washed, exposed to horseradish peroxidase-linked secondary antibodies (1:1000; Golden Bridge, Beijing, China) for 1 h at room temperature, and finally detected by chemiluminescence (ECL, Amersham, Buckinghamshire, UK). The amount of protein in the blots was quantified using a densitometer and Multi Gauge version 3.0 software (FujiFilm Life Science, Tokyo , Japan).
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