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2 protocols using carvii confocal imager

1

Immunofluorescence Imaging of Tight Junctions

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Cells, 1.0 × 105, were seeded and grown as a monolayer on 8‐well chambered slides (LAB‐TEK) for 3 weeks. Cells were washed with PBS and fixed with one of the following steps: (1) preextracted with 0.2% TritonX/PBS on ice followed by 1% paraformaldehyde/PBS for 15 min at RT; (2) fixed directly with 1% paraformaldehyde/PBS for 15 min at RT; (3) fixed directly with 100% methanol for 5 min on ice; and (4) fixed directly with 100% Acetone for 5 min on ice. Cells were permeabilized with 0.5% Tween/PBS and blocked in 0.1% Tween/casein/PBS before primary antibody staining. Tissue postfixation was done with 4% paraformaldehyde/PBS and mounted with Prolong Gold antifade reagent with DAPI (Life Technologies). Images were obtained using a spinning disk BD CARVII Confocal Imager (BD Biosystems, San Jose, CA) on a Zeiss Axio Observer inverted microscope (Carl Zeiss Microscopy, Thornwood, NY) at 63X objective lens controlled by MetaMorph imaging software (Molecular Devices, Sunnyvale, CA). Image Z resolution was further optimized with Volocity software (PerkinElmer, Waltham, MA). For non‐Z‐stacked higher resolution images, a Leica SP5 inverted laser confocal micorscope was used. Antibodies used: Anti‐claudin 3(#ab15102, AbCam, Cambridge, MA), anti‐claudin4 (#329400, Life Technologies), Anti‐human CD137 (#552533, BDBioscience), phalloidin‐Alexa 647(A22287, Life Technologies).
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2

Multimodal Imaging of Tumor Hypoxia and Extracellular Matrix

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Tumor sections were imaged using a fluorescence microscope (BD CARV II Confocal Imager; BD Biosciences), a Quentem 512sc Photometrics camera (Photometrics), and a MIV2000 motorized x-y stage (MetaMorph Imaging System; Molecular Devices), at the following excitation/emission (Ex/Em) wavelengths: HA, DiI, and CD31: 562 nm/624 nm; Hypoxyprobe-1, ColI, and α-SMA: 490 nm/520 nm.
Captured Hypoxyprobe-1 and ColI images were then analyzed with Image-Pro Analyzer 7.0 software (Media Cybernetics). For α-SMA quantification, bright field slides were scanned using the Aperio AT2 scanner (Leica Biosystems), and images were analyzed with HALO image analysis software (Indica Lab). Necrotic regions were excluded from analysis. The percent fluorescent positive area was calculated as the fluorescent signal area divided by the entire tumor area (% positive area = positive signal area/total area). HA levels were quantified using the Spectrum Positive Pixel Count V9 Aperio scoring algorithm (Leica Biosystems).
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