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4 protocols using goat anti rabbit secondary antibody sc 2004

1

Western Blot Protein Expression Analysis

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About 100 µg of cell lysates were resolved on Bolt™ 4–12% Bis-Tris Plus Gels (NW04120BOX, Thermo-Fisher Scientific). The separated proteins were transferred on to Odyssey® Nitrocellulose Membranes (LI-COR, Lincoln, NE, USA) using a Mini-PROTEAN® 3 Electrophoresis System (Bio-Rad, Hercules, CA, USA) filled with 800 mL of transfer buffer and run at 20 V for 10 h at 4 °C using a PowerPac Basic (Bio-Rad). The membranes were blocked with 5% milk in TBST for 1 h. The SRC, EPHB2, and GAPDH bands were probed with specific antibodies and then secondary antibodies. The bands were visualized after being incubated in 5% milk in TBST with 1:2000 goat anti-rabbit secondary antibody (sc-2004, Santa Cruz Biotechnology, Santa Cruz, CA, USA) for 1 h. The membranes were put in between two pieces of plastic wrap and loaded into an Amersham Hypercassette (GE Healthcare Life Sciences, Pittsburgh, PA, USA). Membranes were exposed with HyMembrane CL Autoradiography Film (Denville Scientific, Metuchen, NJ, USA) to obtain images that were subject to scanning and then densitometric quantification for protein expression using ImageJ [85 (link)].
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2

Western Blot Analysis of CAPN5 Protein

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Protein levels were detected by western blotting. Total cellular protein was measured using NanoDrop 2000c (ThermoScientific). Reactions were carried out with 4× LDS-sample buffer, 10× reducing agent and equal amounts of protein. Reactions were denatured for 5 min at 90°C. Samples were then separated electrophoretically on a 15-well 4%–12% Bis–Tris gel (Life Sciences) and transferred onto a nitrocellulose membrane using an iBlot dry blotting system (ThermoScientific). Proteins were immunostained with anti-CAPN5 (GTX103264, GeneTex; 1: 1000 dilution) and anti-GAPDH (sc-25778, Santa Cruz Biotechnology; 1: 1000 dilution) and goat anti-rabbit secondary antibody (sc-2004, Santa Cruz Biotechnology; 1: 1000 dilution). The immunoreactive bands were detected with Supersignal West Dura Extended Duration Substrate (ThermoScientific). Visualization was performed with MYECL Imager (ThermoScientific).
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3

Quantification of Nrf2 Nuclear Translocation

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HMECs were seeded at a density of 1,000,000 per well and grown in 6-well plates until they reached full confluence, then cells were incubated with bardoxolone methyl, dimethyl fumarate, and L-sulforaphane for three hours. To measure Nrf2 expression in the nucleus, a Nuclear Extract Kit (Active Motif) was used to isolate the nuclear and cytoplasmic fractions. Nuclear and cytoplasmic extracts (25 or 30 μg protein/sample) were processed as follows: first, the membranes were scanned for total protein content for further band normalization, and subsequently, they were incubated with primary rabbit polyclonal Anti-Nrf2 Antibody (H-300) (sc-13032, Santa Cruz Biotechnology, lot No. GR197455-1) 1 : 1000 overnight and with goat anti-rabbit secondary antibody (sc-2004, Santa Cruz Biotechnology, lot No. 12314) 1 : 2500 for 45 minutes. After chemiluminescent band detection, membranes were washed and incubated with primary Anti-Lamin A/C Monoclonal Antibody (mab636, Thermo Fisher Scientific, lot No. QF215120) 1 : 1000 overnight and with anti-mouse secondary antibody (sc-516102, Santa Cruz Biotechnology) 1 : 5000 for 1 hour. Bands were again detected with the use of chemiluminescence, measured and normalized to total protein content using Image Lab Software (Bio-Rad).
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4

PIF1 Protein Extraction and Analysis

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Seedlings were collected and immediately frozen in liquid nitrogen under a dim green light. The seedlings were then ground using a TissueLyser (QIAGEN) and dissolved in denaturing buffer (100 mM NaH 2 PO 4 , 10 mM Tris-HCl, 8 M urea [pH 8.0]) via vigorous vortexing. Debris was removed by centrifugation at 19 000 3 g for 10 min at 4 C (MICRO 17TR; Hanil). Supernatants were separated on an 8% SDS-polyacrylamide gel, transferred to a nitrocellulose membrane (Hybond ECL; Amersham) using transfer buffer (5.8 g/L Tris base, 29 g/L glycine, 20% methanol, and 0.01% SDS), and probed with a rabbit polyclonal anti-PIF1 antibody. After incubation with a goat anti-rabbit secondary antibody (sc-2004; Santa Cruz Biotechnology), blot signals were detected using an ECL detection kit (LPS solution).
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