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175 protocols using ab62352

1

Determination of NRF2 Ubiquitination

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For the NRF2 ubiquitination determination, the cells were harvested with RIPA buffer (9806, Cell Signaling, Danvers, MA, USA) and the lysates were submitted to three freeze–thaw cycles. After centrifugation, the supernatants were collected for use and the protein concentration was determined with Pierce BCA Protein Assay Kit (23225, Thermo Fisher Scientific, Waltham, MA, USA). The NRF2 was immunoprecipitated from the total cell lysates (containing 1 mg of total protein) with 8 μg of anti-NRF2 antibody (PM069, MBL International Corporation, Woburn, MA, USA) and the NRF2 ubiquitination was analyzed by Western blot with anti-ubiquitin antibody (AUB01-HRP, Cytoskeleton, Denver, CO, USA). The membranes were stripped and reprobed with anti-NRF2 antibody (ab62352, Abcam, Cambridge, UK) to determine the levels of immunoprecipitated NRF2. A sample, immunoprecipitated with 8 μg of Normal Rabbit IgG (2729, Cell Signaling, Danvers, MA, USA), was used as a control for nonspecific bindings. A sample (40 μg of protein) of the pre-immunoprecipitation lysate was also analyzed by Western blot with anti-NRF2 antibody (ab62352, Abcam, Cambridge, UK) to show levels of NRF2 before immunoprecipitation (input). The densitometric analysis was completed using the UVP VisionWorks LS Analysis Software (UVP, Upland, CA, USA). The ubiquitinated NRF2 was normalized by immunoprecipitated NRF2.
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2

Immunohistochemical Analysis of dCK and NRF2

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The clinical tissue samples used in this study were histopathologically and clinically diagnosed at Fudan University Shanghai Cancer Center. Prior patient consent and approval from the Institutional Research Ethics Committee were obtained. Paraffin‐embedded tissue slides were deparaffinized in xylene, rehydrated through graded alcohol solutions, blocked in methanol containing 3% hydrogen peroxide, and then incubated with dCK and NRF2 antibodies. The dCK antibody (Abcam, ab96599) was used at a dilution factor of 1:50. The NRF2 antibody (Abcam, ab62352) was diluted to a ratio of 1:100, and then, the slides were rinsed in PBS solution and incubated with secondary antibodies and peroxidase reagent at room temperature. Finally, the slides were incubated with 3,3′‐diaminobenzidine solution at room temperature for 10 minutes and counterstained with haematoxylin. A scoring scale was used to evaluate the percentage of stained cells (0, <10%; 1, 10%‐25%; 2, 25%‐50%; 3, 50%‐75%; 4, >75%) and the staining intensity (0, negative; 1, low; 2, moderate; 3, strong). The overall staining scores were determined by combining the two scores (frequency × intensity). An immunohistochemical score >6 was defined as high expression, whereas a score ≤6 was considered a low expression level.
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3

Immunofluorescent Analysis of α-SMA and Nrf2

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Slides were then incubated with specific primary antibodies against a-SMA (rat, Ab5694, 1 : 200, Abcam, USA) and Nrf2 (Ab62352, 1 : 200, Abcam, USA) at 4°C overnight. Next day, after washing with 1x PBS for 5 min/3times, slides were incubated with secondary antibody (1 : 500, Boster, China) for 1 h at room temperature. Then, samples were stained with DAPI (AR1177, BOSTER, China) and sealed in antifade fluorescence mounting medium (AR1109, BOSTER, China) with coverslips. The detection of a-SMA and Nrf2 proteins was performed under a fluorescence microscope (IX71, Olympus, Japan). Nrf-2 positive cells were counted using Image pro plus software. The percentage of Nrf-2 in the nucleus was quantitatively analyzed by the ratio of nuclear Nrf-2 positive cells to total cells in each field.
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4

Oxidative Stress Pathway Evaluation

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Sulfasalazine and BSO were from Santa Cruz Biotechnology, DYC was from Tokyo Chemical Industry and OXY was from Alfa Chemistry. For immunoblot analysis, human xCT was detected with rabbit monoclonal antibodies (#12691, 1:1000 dilution; Cell Signaling Technology), Nrf2 with rabbit monoclonal antibodies (ab62352, 1:500 dilution; Abcam) and β‐actin with mouse monoclonal antibodies (sc‐47778, 1:500; Santa Cruz Biotechnology). For immunocytofluorescence analysis, 4‐HNE was detected with mouse monoclonal antibodies (MAB3249, 1:100; R&D Systems). For immunohistochemical or immunohistofluorescence analysis, 4‐HNE was detected with mouse monoclonal antibodies (HNEJ‐2, 1:100; JaICA) and cyclooxygenase‐2 (COX‐2) was detected with rabbit polyclonal antibodies (HPA001335, 1:100; Atlas Antibodies).
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5

Western Blot Analysis for Oxidative Stress

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Cells were lysed in RIPA buffer that contained a protease/phosphatase inhibitor cocktail (Sigma-Aldrich) at 4 °C for 30 min and used for immunoblotting. The cytosolic fraction for cathepsin B detection was prepared as previously described45 (link). A total of 20 μg of protein was loaded per lane of an SDS-PAGE gel and separated by electrophoresis. Proteins were transferred onto nitrocellulose (GE Healthcare, IL, USA) or PVDF membranes (IPVH00010, Millipore, MA, USA). Membranes were subsequently probed with primary antibodies and incubated with either goat anti-mouse IgG (Cell Signalling, 7076, MA, USA) or goat anti-rabbit IgG (Cell Signaling,7074) secondary antibodies conjugated with horseradish peroxidase (HRP). Chemiluminescence was detected using an enhanced chemiluminescence (ECL) system (Translab). The following primary antibodies were used: GPX4 (ab125066, Abcam), SCL7A11 (Cell Signalling, 12,691), Nrf2 (ab62352, Abcam), Keap1 (Cell Signalling, 8047), HO-1 (Cell Signalling, 5853), p62 (ab56416, Abcam), LC3 (PM036, MBL), cathepsin B (Cell Signalling, 31,718) and β-actin (Santa Cruz Biotechnology, sc-47778). The result of gels images was cropped and full-length gels and blots are included in the Supplementary Data.
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6

Brain Tissue Protein Analysis

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Total proteins in the brain tissues were extracted in RIPA lysis buffer (Beyotime), and the protein concentration was measured by a BCA protein concentration kit (Beyotime). The proteins were then separated by sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and electro‐transferred onto the polyvinylidene difluoride membrane (Millipore). After being blocked with 5% skimmed milk for 1 h at room temperature, the membranes were firstly incubated with primary antibodies, including anti‐p‐IKKβ (1:500; ab194519; Abcam), anti‐IKKβ (1:1000; ab124957; Abcam), anti‐p‐IkBα (1:3000; ab133462; Abcam), anti‐IkBα (1:1000; ab32518; Abcam), anti‐NF‐κB p65 (1:1000; ab16502; Abcam), anti‐NF‐κB p‐p65 (S536) (1:500; ab86299; Abcam), anti‐Nrf2 (1:1000; ab62352; Abcam), anti‐HO‐1 (1:500; ab13248; Abcam), anti‐NQO1 (1:500; ab80588; Abcam), anti‐Histone 3 (1:1000; ab1791; Abcam), and anti‐β‐actin (1:1000; ab8226; Abcam), at 4℃ overnight and then with corresponding secondary antibodies (1:3000; Beyotime) at room temperature for 1 h. The blotted protein bands were visualized by an enhanced chemiluminescence kit (Beyotime, Shanghai, China). Image J software (NIH Image) was used to analyze the gray level of the bands.
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7

Western Blot Analysis of Cardiac Proteins

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Proteins were extracted from frozen heart tissues and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis [20 (link), 21 (link)]. After that, the proteins were transferred to PVDF membranes (Merck Millipore, Massachusetts, USA). Membranes were then blocked in nonfat milk for 2 hours and incubated overnight at 4°C with primary antibodies against Nrf2 (Abcam, Cambridge, MA, UK, ab62352, 1 : 1000), heme oxygenase 1 (HO-1, Abcam, ab13248, 1 : 1000), GAPDH (Abcam, ab181602, 1 : 1000), Bax (Abcam, ab32503, 1 : 1000), and Bad (Abcam, ab32445, 1 : 1000). After that, the membrane was reacted with the secondary antibodies for 1 h at room temperature, was stained with an enhanced chemiluminescence reagent, and was visualized using the BIO-RAD ChemiDoc Touch Imaging System (BIO-RAD, Hercules, CA, USA). GAPDH was used as the internal control.
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8

Immunohistochemical Profiling of Tumor Markers

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Sections of resected tumor tissue (4 μm thick) from the 21 patients were prepared by fixing in formalin and embedding in paraffin. Mouse monoclonal antibodies for Nrf2 (Abcam, ab‐62352), Ki‐67 (Abcam, ab‐21700), p53 (Abcam, ab‐131442), and β‐catenin (Abcam, ab‐16051) were used for staining.23 Staining results were used to separate tumors into a group with low expression of anti‐Nrf2, anti‐Ki‐67, anti‐p53 antibody, and anti‐β‐catenin (<30% of cells with positive staining) and a group with high expression (≥30% of cells with positive staining).23
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9

Phillyrin Modulates Oxidative Stress and Apoptosis in ARPE-19 Cells

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Human ARPE-19 cell line was purchased from Beijing Beina Chuanglian Biotechnology Research Institute (Beijing, China). Phillyrin (batch number Z17A8X34077, purity > 98%) was a product of the China Food and Drug Administration (Beijing, China). Dulbecco's Modified Eagle's Medium/nutrient mixture F-12 (DMEM/F-12), fetal bovine serum (FBS), penicillin, and streptomycin solutions were purchased from Corning (NY, USA). Trypsin (0.05%) and phosphate buffered saline (PBS) were produced by Gibco, Invitrogen (Carlsbad, CA, USA). Dimethyl sulfoxide (DMSO), 3-(4,5-dimethylthiazol-2-yl-)-2,5-diphenyltetrazolium bromide (MTT), ML385, N-acetylcysteine (NAC)m and H2O2 solution were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against Fas (ab82419), cytochrome c (ab90529), cleaved caspase-3 (ab2302), cleaved caspase-9 (ab2324), NQO1 (ab80588), Keap1 (ab118285), Bcl-2 (ab185002), Nrf2 (ab62352), CDK2 (ab32147), cyclin A (ab33911), cyclin E (ab181591), Bax (ab53154), β-actin (ab8226), p21 (ab188224), Histone H3 (ab1791), COX IV (ab16056) p53 (ab241556), pro caspase-3, pro caspase-8, and pro caspase-9 were obtained from Abcam, Cambridge, (MA, USA). Antibodies against p-p53 (9286S), cleaved caspase-8 (9496S), cleaved PARP (5625S), and HO-1 (86806S) were purchased from Cell Signaling Technology, Beverly, (MA, USA).
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10

Nrf2 Protein Immunoprecipitation Protocol

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Cells were lysed in Nonidet P-40 lysis buffer (50 mM Tris hydrochloride, 140 mM NaCl, 1% NP-40, and 10% glycerol; pH 7.5) containing a protease inhibitor cocktail (Sigma-Aldrich, Japan). Cell lysates containing an equal amount (820 µg) of protein were incubated with 1 µg of rabbit monoclonal anti-Nrf2 (ab62352, Abcam) and protein A/G plus agarose (sc-2003, Santa Cruz Biotechnology) on a rotator shaker at 4°C overnight. The beads were washed with RIPA buffer and boiled in 1X SDS sample buffer at 95°C for 5 min. Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and immunoblotted as described above.
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