The largest database of trusted experimental protocols

Fast sybr green master mix

Manufactured by Roche
Sourced in United States, Switzerland, Germany, France

Fast SYBR Green Master Mix is a ready-to-use solution for quantitative real-time PCR (qPCR) experiments. It contains all the necessary components, including SYBR Green I dye, for efficient and sensitive detection of target DNA sequences.

Automatically generated - may contain errors

55 protocols using fast sybr green master mix

1

Measuring mRNA and miRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Leaves (two-week old rosettes), floral clusters (five weeks) and bent cotyledon embryos (eight DAP) were homogenized in 500 μl TRIzol reagent (Invitrogen) and total RNA was isolated and purified according to manufacturer’s recommendations. For mRNA, 200 ng of total RNA was used for cDNA synthesis with SuperScript III Reverse Transcriptase (Thermo Fisher Scientific). The cDNA was diluted two-fold for embryos or ten-fold for leaves and floral buds with nuclease-free water. Two μL of diluted cDNA was used as a template for the qRT-PCR with Fast SYBR Green Master Mix (Roche) on a LightCycler 96 instrument (Roche) with two technical replicates for each biorep. For miRNA823 quantification, corresponding stem-loop primers were added to the RT reaction (adapted from Yang et al., 2014 (link)) and miR823 levels were measured using Fast SYBR Green Master Mix (Roche) with miRNA823-specific forward primer and a stem-loop specific universal reverse primer. U6 snRNA was used as the reference RNA (adapted from Shen et al., 2010 (link)). Primers used for qRT-PCR are listed in Supplementary file 5.
+ Open protocol
+ Expand
2

Osteogenic Potential of Dual-Function Scaffolds

Check if the same lab product or an alternative is used in the 5 most similar protocols
To detect the osteogenic induction ability of this dual-function composite scaffolds, BMSCs were seeded in plate (Con), pTi, pTi@L-Gel, pTi@M-Gel, and pTi@H-Gel groups at a density of 5 × 105 cells for per well. After culture for 14 and 21 days by osteogenic induction medium, alizarin red (AR) staining was conducted to measure calcium deposition. And then, 10% cetylpyridinium chloride was incorporated into the dyed mineralized nodules to dissolve the stained calcium nodule for further semi-quantitative analysis. The obtained sample solution was measured at 450 nm by microplate reader.
In addition, the expression of osteogenic differentiation related genes, including alkaline phosphatases (ALP), runt-related transcription factor-2 (Runx-2), osteocalcin (OCN), and bone morphogenetic protein (BMP-2) were detected by real-time quantitative PCR (RT-qPCR) after osteogenic induction for 14 and 21 days. The sequences of primers were listed in Table S1. The amplification and detection of RT-qPCR was carried out by a LightCycler 480 through 2× Fast SYBR Green Master Mix (Roche Diagnostics, Basel, Switzerland). Relative mRNAs expression levels were normalized to that of GAPDH and calculated by the 2-ΔΔCt method.
+ Open protocol
+ Expand
3

Quantitative mRNA Analysis of Key Neurological Targets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quantification of mRNA was performed for the following proteins: NFκ-B, neuropeptide Y (NPY), 5-hydroxytryptamine (serotonin) receptor 1B, glycine receptor alpha-4 subunit, pro-opiomelanocortin. The PCR mixture contained 1 μl diluted cDNA, 10 μM gene-specific primer (forward and reverse mixed together) and 10 μl of 2 × Fast SYBR Green Master Mix (Roche Diagnostics, Rotkreuz, Switzerland) in a total volume of 20 μl. Amplification was performed in 96-well optical reaction plates (Roche Diagnostics) on LightCycler 480 (Roche Diagnostics) using the following programme: 94 °C for 3 min to activate polymerase, 40 cycles at 94 °C for 20 s, 60 °C for 20 s and 72 °C for 20 s; melting curve analysis was performed after every run by heating up to 95 °C to monitor presence of unspecific products. Two negative controls were included in each assay run, with water instead of template. Three replicate measurements for each sample were performed. Primers were designed and checked with Primer Quest Tool (IDT) and NCBI primer BLAST tool and synthesised by Macrogen (Seoul, South Korea). Primer sequences are listed in Supplementary Table 1.
+ Open protocol
+ Expand
4

Osteogenic Differentiation of Ti6Al4V Scaffolds

Check if the same lab product or an alternative is used in the 5 most similar protocols
The Ti6Al4V powder was purchased from AK Medical Co., Ltd. (Beijing, China). Poloxamer 407 powder was obtained from Bayee Chemical Co., Ltd. (Hangzhou, China). BMP-2, OPG, and antibodies used in immunofluorescence were obtained from Abcam (Cambridge, UK). Low Glucose Dulbecco’s Modified Eagle’s Medium (DMEM), streptomycin double-antibody, and fetal bovine serum (FBS) were obtained from Gibco (Grand Island, NY, USA). Paraformaldehyde and phosphate-buffered saline (PBS) were obtained from Coolabar (Beijing, China). Cell Counting Kit-8 (CCK-8) and Calcein-AM/propidium iodide (PI) were supplied by Beyotime Biotechnology (Shanghai, China). The osteogenic medium used for alizarin red dye was obtained from Cyagen (Santa Clara, CA, USA). The Perfect Real-Time RE reagent kit from Takara Bio (Dalian, China), 2× Fast SYBR Green Master Mix from Roche Diagnostics (Basel, Switzerland), and TRIzol reagent (Invitrogen, CA, USA) were used. The Runx-2, OPN, and RANKL antibodies were supplied by Abcam (Cambridge, UK) and DAPI from Solarbio (Beijing, China). The Electrochemical Immunoassay Kit was obtained from Roche-Mannheim (Mannheim, Germany). The tartrate-resistant acid phosphatase (TRAP) staining kit was obtained from Sigma-Aldrich (St. Louis, MO, USA). The ultrapure water used in the study was obtained from a Milli-QA10 filtration system (Millipore, Billerica, MA, USA).
+ Open protocol
+ Expand
5

Chondrogenic Evaluation of ADSCs in HA-EGCG Hydrogel

Check if the same lab product or an alternative is used in the 5 most similar protocols
ADSCs were seeded in 48-well plates pre-coated with 100 μL HA or 100 μL HA-EGCG hydrogel at the density of 1×104/well under the oxidative environment as described above. After incubation with chondrogenic induction medium for 14 days, cell samples were collected for real-time PCR analysis. In brief, the samples were ground within TRIzol reagent to extract total mRNA. The concentration of acquired RNA was determined by Infinite 200 PRO NanoQuant Microplate Readers (TECAN). Then the RNA (1 μg) was used for cDNA synthesis. Real-time PCR was performed using 2× Fast SYBR Green Master Mix (Roche Diagnostics, Basel, Switzerland) and ABI StepOnePlus™ Real-Time RCR system (Applied Biosystems). The relative mRNAs expression was calculated by the 2−ΔΔCt formula. The primer sequences of GAPDH, IL-1β, MMP-13, TNF-α, aggrecan (ACAN), type II collagen (COL-2), and Sex determining region Y box 9 (SOX-9), were listed in Table 1.
+ Open protocol
+ Expand
6

Gene Expression Analysis by RT-qPCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Firstly, total RNA was extracted using TRlzol reagent. Subsequently, cDNA synthesis was conducted using the StarScript III All-in-one RT Mix with gDNA Remover (A230). Next, RT-qPCR was performed utilizing 2× Fast SYBR Green Master Mix (Roche Diagnostics, Basel, Switzerland) on a LightCycler 480 (Roche Diagnostics). The primer sequences employed are presented in Table 1. Finally, the 2−ΔΔCt method was employed to evaluate the expression of the characteristic genes.

Primers for Real-Time Quantitative Polymerase Chain Reaction (RT-qPCR)

PrimerSequence
ACSS3FAACATTATTTGTGGCTGGAGAACG
ACSS3RAACATTGTATCCTGGGACGCTTT
ADRB2FGGGTCTTTCAGGAGGCCAAA
ADRB2RATGCCTAACGTCTTGAGGGC
ALPK2FCCAAAGGAACTACAAACTCGCTG
ALPK2RCATACGGGATATTGTTCTCAGGC
FGD4FCTCCAAAGCCATTACACCTGC
FGD4RTGCCTCCTTCAAAGCGACTG
FGFR1FCAGACAACCTGCCTTATGTCCA
FGFR1RAGGGCTTCCAGAACGGTCAA
Internal reference (GAPDH)FGGAAGCTTGTCATCAATGGAAATC
Internal reference (GAPDH)RTGATGACCCTTTTGGCTCCC
+ Open protocol
+ Expand
7

Quantification of Osteogenic Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The expression of genes involved in osteogenic differentiation was determined by real-time quantitative PCR (RT-qPCR), including Runx-2, Col-1, OCN, and OPN, in the BMSCs at 14 and 21 days after osteogenic induction and bone tissues. The primers sequences are listed in Table 1. Total RNA was collected by TRIzol reagent. Synthesis of cDNA was performed using an Eastep Super Total RNA Extraction Kit according to the manufacturer’s instructions. An A260/A280 value of approximate 2.0 was generally accepted for further analysis. The amplification and performance of RT-qPCR were carried out by adopting 2× Fast SYBR Green Master Mix (Roche Diagnostics, Basel, Switzerland) and detected by a LightCycler 480 (Roche Diagnostics). The relative mRNA expression was normalized by GAPDH and calculated according to the formula of the 2−ΔΔCT method. For RT-qPCR of the bone, tissues were collected and quickly placed in a mortar precooled with liquid nitrogen and repeatedly ground to powder in liquid nitrogen for RT-qPCR as previously described.
+ Open protocol
+ Expand
8

Total RNA Extraction and Quantitative RT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using the RNeasy Kit (QIAGEN, Hilden, Germany), and cDNA was synthesized using the PrimeScript RT Reagent Kit with gDNA Eraser (TAKARA, Kusatsu, Japan) according to the manufacturer's instructions. Quantitative RT‐PCR was performed in triplicate using a QuantStudio 5 (ThermoFisher, Singapore) and the Fast SYBR Green Master Mix (Roche, Mannheim, Germany), as previously described.36 All primers used in this study are listed in Table S2.
+ Open protocol
+ Expand
9

Quantifying PD-L1 mRNA Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
To quantify the level of PD-L1 mRNA in the PD-L1 variant overexpressing cells, cDNA, Fast SYBR green Master Mix (Roche), and primers (PD-L1: forward 5′-TGG​CAT​TTG​CTG​ACG​CAT​TT-3′ and reverse 5′-TGC​AGC​CAG​GTC​TAA​TTG​TTT​T-3′; GAPDH: forward 5′-TGC​ACC​ACC​AAC​TGC​TTA​GC-3′ and reverse 5′-GGC​ATG​GAC​TGT​GGT​CAT​GAG-3′) were mixed. The reaction was performed using the LightCycler 96 system (Roche).
+ Open protocol
+ Expand
10

Quantitative PCR for AMPA Receptor Subunits

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cell culture using RNeasy Micro Kit (QIAGEN) and cDNA was subsequently generated using Superscript Vilo Synthesis Kit (Invitrogen) according to manufacturer’s manuals. qPCR was run on Applied Biosystems 7500 machine (Life Technologies) using Fast SYBR Green Master Mix (Roche). Primers used in this study are:

GRIA1_F: acgGTTTGGGATATTCAACAGTTTGTGGTTCTC

GRIA1_R: cgtGACCTGGGAGAAATGTCACATCCTT

GRIA2_F: cgaTAAAGAGTTTTTCAGGAGAT

GRIA2_R: cgtCAGAGGGCTCCGCACTCCGCATGT

GRIA3_F: cgaCCATCAGCATAGGTGGACTTTTCAT

GRIA3_R: tcgGTTGTATAACTGCACGGCAAAGC

GRIA4_F: cgaCTAGAAAGGTTGGTTACTGGAATGATATG

GRIA4_R: cgtGCTGTGTCATTGCCAAGAGTT

+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!