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Non targeting pool

Manufactured by Horizon Discovery
Sourced in United States

The Non-targeting Pool is a set of small interfering RNAs (siRNAs) designed to have no known targets in the human, mouse, or rat genomes. It is intended for use as a control in RNA interference (RNAi) experiments to assess off-target effects.

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24 protocols using non targeting pool

1

Optimizing RNA Interference Knockdowns

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Cells were transfected with siRNA oligonucleotides using Lipofectamine RNAiMAX transfection reagent (Thermo Fisher Scientific) following the manufacturer’s guidelines. Cells underwent 1 or 2 rounds of siRNA transfection as necessary.
NON-TARGETing siRNA pool (Dharmacon ON-TARGET plus NON-TARGETing Pool—D-001810-10-05. UGGUUUACAUGUCGACUAA; UGGUUUACAUGUUGUGUGA; UGGUUUACAUGUUUUCUGA; UGGUUUACAUGUUUUCCUA)
PLK1 siRNA sequence (Dharmacon ON-TARGET plus SMARTpool—L-003290-00-0005. GCACAUACCGCCUGAGUCU; CCACCAAGGUUUUCGAUUG; GCUCUUCAAUGACUCAACA; UCUCAAGGCCUCCUAAUAG)
Sgo1 siRNA sequence (Dharmacon ON-TARGET plus SMARTpool—L-015475-00-0005. CAGCCAGCGUGAACUAUAA; GUUACUAUCUCACAUGUCA; AAACGCAGGUCUUUUAUAG; GUGAAGGAUUUACCGCAAA)
BLM siRNA sequence (Dharmacon ON-TARGET plus Individual—J-007287-08-0005. GGAUGACUCAGAAUGGUUA)
PICH siRNA sequence (Invitrogen—AAUUCGGUAAACUCUAUCCACAGCU)
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2

TGFβ-induced Cellular Response

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6 × 104 cells were seeded in a 6-well plate and on the following day treated with 50 nM of ON-TARGET plus Polr1a siRNA- SMARTpool (Dharmacon) and ON-TARGET plus NON-TARGETing pool (Dharmacon) respectively using DharmaFECT 4 (Dharmacon) transfection reagent overnight. Media was replaced the next day and the cells are treated with TGFβ on the 4th day. The cells were fixed with 4% paraformaldehyde after 48 h and subsequently stained for the respective markers.
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3

TRPM7 Knockdown in HUVECs by Electroporation

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Due to the difficulty of transfecting DNA or RNA into HUVECs, electroporation was used for introducing siRNA into these cells. The siRNAs transfected were Human TRPM7 (Dharmacon, L-005393-00) and Non-targeting pool (Dharmacon, D-001810-10-05). As in the case of infection by adenovirus, the cells were passaged from a 80 to 90% confluent dish into 100x20 or 60x15 mm cell culture dishes between 16 and 18 hours before the electroporation. At the electroporation time, approximately 120,000 cells were resuspended in Gene Pulser electroporation buffer (Bio-rad, 165–2676) and placed in a Gene Pulser cuvette, 0.2 cm electrode gap (Bio-rad, 165–2082), along with siRNA at 100 nM or 200 nM. The electroporation of HUVECs was then conducted in a Gene Pulser Xcell Total System (Bio-Rad, 165–2660), with a single pulse of a square wave at 150 V for 20 ms. The electroporated cells were plated on a 35x10 mm cell culture dish (Corning, 430165). Experiments were conducted 2 days after electroporation.
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4

RIP1 Knockdown in REH Cells

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Experiments were carried out 48 h after transient transfection (Amaxa Nucleofector, Lonza, Basel, Switzerland) with siRNA oligonucleotides (ON-TARGETplus Human RIP1 siRNA SMART pool and NON-TARGETING pool; Dharmacon, Lafayette, USA). REH cells with stable (shRNA) RIP1 knockdown were kindly provided by S Löder and Dr. Fulda, Ulm, Germany.29 (link)
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5

RNA Interference Assay for PDK4 Knockdown

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ON-TARGETplus Human PDK4 siRNA SMART pool was synthesised by Dharmacon (Lafayette, CO, USA). The four target sequences were 5′-GAGCAUUUCUCGCGCUACA-3′, 5′-CGACAAGAAUUGCCUGUGA-3′, 5′-CAACGCCUGUGAUGGAUAA-3′ and 5′-GACCGCCUCUUUAGUUAUA-3′. ON-TARGETplus Human GAPDH Control Pool and Non-targeting Pool (Dharmacon) were used as positive and negative controls, respectively. Double-stranded siRNA transient transfections were carried out on subconfluent (50–60%) LoVo or DLD1 cells seeded into six-well plates. Lipofectamine RNAiMAX (Life Technologies) transfection reagent was used as previously described (Pham et al, 2013 (link)). Effective transfection was confirmed by BLOCK-iT Alexa Fluor Red fluorescent Oligo (Life Technologies). Migration, invasion and viability assays were performed as before (Pham et al, 2013 (link)).
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6

Regulation of Glioma Cell Behavior by NF-κB

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Glioma cells were transiently transfected with 100 μM of NFкB (RelA)-specific siRNA (ON-TARGETplus Human RelA siRNA-SMARTpool, Dharmacon) and 100 μM control-siRNA (ON-TARGETplus Non-targeting Pool) for 48 h followed by mRNA expression and promoter-activity analysis in pGL3F1 co-transfected cells. Cell migration/invasion assay and anchorage-independent growth assays were performed after knockdown of NFкB (RelA) following the methods previously published [19 (link)].
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7

Assessing hPXR Transcriptional Activity

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HepG2-FLAG-hPXR and LS174 T cells were transfected with 200 nM of ON-TARGETplus SMARTpool siRNA targeting PXR (Dharmacon) or Nontargeting Pool (Dharmacon) using Lipofectamine RNAiMAX (Invitrogen). Efficiency of hPXR knockdown was confirmed in HepG2-FLAG-hPXR and LS174 T cells using western blots and RT-PCR, respectively. hPXR target gene expression was analyzed in the siRNA transfected LS174 T cells after treating with DMSO, RIF or DIM for 24 h in the assay media. hPXR transactivation function was assessed in the siRNA transfected HepG2-FLAG-hPXR cells by transiently transfecting with CYP3A4-LUC and CMV-Renilla luciferase plasmids.
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8

siRNA Knockdown of CUL5 and STAT1

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Small interfering RNA (siRNA) SMARTpool: ON-TARGETplus CUL5 siRNA and STAT1 siRNA and SMARTpool: ON-TARGETplus non-targeting pool were purchased from Dharmacon (Lafayette, OH, USA), and siRNA transfection was performed following the manufacturer’s protocol. Briefly, 300,000 cells were seeded in a six-well plate and grown for 24 h in complete medium to 75%–80% confluency. Cells were then transfected with no target control (siNT), CUL5, and STAT1 siRNA (30nM), using DharmaFECT transfection reagent. After 24 h, transfection media were removed and replaced with CM. Cells were then passaged and used for various designated treatments. Cells were harvested and total protein was extracted from transfected cells, following the same protocol as described below. Western blot was performed to compare protein expression between non-target and target siRNA-transfected cells.
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9

Silencing circFGFR1 in BJ Cells

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For siRNA knockdown experiments, 500,000 BJ cells were transfected with 200 nM siRNAs using the Neon transfection system according to manufacturer’s protocol with suggested settings. Cells were processed and analyzed after 48–72 h. The siRNAs used were ON-TARGET plus nON-TARGETing pool (Dharmacon: D-001810–10-05) and ON-TARGET plus custom circFGFR1 specific siRNA (Sense sequence: GAAGGGUCAGUUUGAAAAGGUU) (Dharmacon: L-003131–00-0005). For protein expression, FGFR1 (cloned from pHAGE-FGFR1 plasmid (Addgene: 116740)) or FLAG tagged circFGFR1p (synthesized from IDT gBlocks Gene Fragments) were cloned into a CMV expressing plasmid (backbone vector: Addgene: 36084). 200–500 ng of plasmids were transfected into the cells using the Neon transfection system. Cells were then processed and analyzed after 48–72 h.
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10

Transfection of siRNAs for Apoptosis Studies

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Non-targeting siRNA-pool (ON-TARGETplus Non-targeting Pool, # D-001810-10-05) and Mcl-1 (SMARTpool: ON-TARGETplus Mcl-1 siRNA, L-004501-00-0005) were purchased from Dharmacon and transfected as previously described21 (link), 35 (link). For single siRNA experiments involving Mcl-1, the following sequences were employed: siRNA-1: GGU UUG GCA UAU CUA AUA A; siRNA-2: GAA GGU GGC AUC AGG AAU G, siRNA-3: GAU UAU CUC UCU CGG UAC CUU, siRNA-4: CGA AGG AAG UAU CGA AUU U (Dharmacon). For siRNA experiments, involving Bcl-xL, siRNAs were either used from Ambion (Silencer® Select s1920; AUA CUU UUG UGG AAC UCU ATT) or Cell Signaling Technology® (Signal silence® Bcl-xL siRNA I; #6362). Silencing of PMAIP1 was performed using Silencer® Select siRNA-1 (s10708; AGA UAU GAA UGU UUC UAA ATT) and siRNA-2 (s10709; AGU CGA GUG UGC UAC UCA ATT) from Ambion. BAK1 knock-down was performed using Silencer® Select s1880 from Ambion. Briefly, cells were incubated for 6 h with the formed complexes of Oligofectamine® 2000 (Invitrogen, Carlsbad, CA) and the respective siRNA (12-well condition) in DMEM without FBS and antibiotics. After 6 h, FBS was added to a total concentration of 1.5%.
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