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6 protocols using anti gfp primary antibody

1

Extraction and Analysis of A. fumigatus Proteins

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To extract proteins from A. fumigatus mycelia, conidia from related strains were incubated in liquid-inducing medium and then shaken at 220 rpm on a rotary shaker at 37 °C for 48 h. The mycelium was ground in liquid nitrogen using a mortar and pestle and suspended in ice-cold extraction buffer (50 mM HEPES (pH 7.4), 137 mM KCl, 10% glycerol, 1 mM EDTA, 1 μg/mL pepstatin A, 1 μg/mL leupeptin, and 1 mM PMSF). Equal amounts of proteins (40 μg) per lane were subjected to 10% SDS – PAGE and transferred to PVDF membranes (Immobilon-P, Millipore) in 384 mM glycine, 50 mM Tris (pH 8.4), and 20% methanol at 250 mA for 1.5 h, the membranes were blocked with PBS, 5% milk, and 0.1% Tween 20. Next, the membrane was probed sequentially with 1:3000 dilutions of anti-GFP primary antibody (Sigma) and goat anti-rabbit IgG-horseradish peroxidase secondary antibody (Abclonal, AS014) diluted in PBS, 5% milk, and 0.1% Tween 20. Blots were developed using Clarity ECL Western blotting detection reagents (Bio-Rad), and images were acquired with a Tanon 4200 Chemiluminescence Imaging System.
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2

Protein Extraction and Western Blot Analysis

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Approximately 200 mg of finely ground mycelia was resuspended in 1 mL of lysis buffer (10 mM Tris-HCl [pH 7.5], 1 mM EDTA, 1 mM phenylmethylsulfonyl fluoride [PMSF]) and 10 μL of protease inhibitor cocktail (Sangon, Shanghai, China). Proteins were separated by SDS-PAGE and transferred onto a polyvinylidene fluoride membrane with a Bio-Rad electroblotting apparatus. Immunoblot analysis was performed with an anti-GFP primary antibody (1:5,000, Sigma-Aldrich, United States) and an anti-rabbit horseradish peroxidase-conjugated secondary antibody (1:10,000, Sigma-Aldrich, United States). Luminescence signals were detected using Pierce ECL western blotting substrate (Thermo Fisher Scientific, Hillsboro, OR, USA) with a ChemiDoc XRS + system (Bio-Rad Laboratories, Hercules, CA, USA).
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3

Protein Extraction from A. fumigatus Mycelia

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To extract proteins from A. fumigatus mycelia, conidia from related strains were incubated in liquid-inducing medium and then shaken at 220 rpm on a rotary shaker at 37 °C for 48 h. The mycelium was ground in liquid nitrogen with a mortar and pestle and suspended in an ice-cold extraction buffer (50 mM HEPES pH 7.4, 137 mM KCl, 10% glycerol, 1 mM EDTA, 1 μg/mL pepstatin A, 1 μg/mL leupeptin, 1 mM PMSF). Equal amounts of proteins (40 μg) per lane were subjected to 10% SDS–PAGE and transferred to PVDF membranes (Immobilon-P, Millipore) in 384 mM glycine, 50 mM Tris (pH 8.4), and 20% methanol at 250 mA for 1.5 h, and the membranes were then blocked with phosphate-buffered saline (PBS), 5% milk, and 0.1% Tween 20. Next, the membrane was probed sequentially with 1:3000 dilutions of an anti-GFP primary antibody (Sigma) and goat anti-rabbit IgG-horseradish peroxidase secondary antibody (Abclonal Co., AS014, Woburn, MA, USA) diluted in PBS, 5% milk, and 0.1% Tween 20. Blots were developed using Clarity ECL western blotting detection reagents (Bio-Rad, Hercules, CA, USA), and images were acquired with a Tanon 4200 Chemiluminescence Imaging System (Tanon, St Andrews, Scotland).
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4

Quantifying GFP Expression in N. benthamiana

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The N. benthamiana leaf samples were harvested 48 h after infiltration. Total protein was extracted from powdered plant tissue using a phenol solution (0.5 M Tris pH 9.4, 50 mM EDTA, 0.7 M sucrose, 0.1 M KCl containing 2% ß-mercaptoethanol and complete protease inhibitors (Roche)). The protein concentration was measured using a Bradford assay following the manufacturer’s instructions (Bio-Rad). 0.1 mg protein of each sample was separated on Tris-Glycine SDS-PAGE gels and transferred to nitrocellulose membranes using an iBlot (semi-) dry blotting system from Life Technologies. The blotting membrane was blocked with 5% BSA (bovine serum albumin) in TBST solution (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 0.05% Tween 20) for 1 h at room temperature. The membrane was incubated with 1:3000 diluted anti-GFP primary antibody (Sigma) for 3 h at room temperature. The membrane was washed with TBST solution and incubated with a 1:3000 dilution of anti-mouse IgG antibody (Sigma). The signal was detected using an AP conjugate substrate kit (Bio-Rad).
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5

Protein Extraction and Western Blot Analysis

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Cultures were grown to exponential phase in 4% glucose containing SD medium, transferred to 2% galactose containing medium and grown overnight. Then, three OD units were harvested by centrifugation and protein extracts were prepared by using an alkaline lysis method. The cells were permeabilized with 0.185 M NaOH plus 2% β-mercaptoethanol. After 10 min incubation on ice, trichloroacetic acid (TCA) was added to a final concentration of 5%, followed by an additional 10 min incubation step on ice. Precipitates were collected by centrifugation for 5 min at 13000 g and pellets were resuspended in 50 μL of sample buffer (4% sodium dodecyl sulfate, 0.1 M Tris-HCl pH 6.8, 4 mM EDTA, 20% glycerol, 2% β-mercaptoethanol, and 0.02% bromophenol blue) plus 25 μL of 1 M Tris-Base. Samples were separated by standard SDS-PAGE on 12% polyacrylamide gels and further analyzed using standard Western blotting techniques. An anti-GFP primary antibody (Sigma-Aldrich) and anti-Mouse (GAM)-HRP conjugated secondary antibody (Biorad) were used. The ECL method (SuperSignal West Pico or Femto, Thermo Scientific) was used for detection and visualization of the blots was performed with a UVP Biospectrum® Multispectral Imaging System.
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6

Western Blot Analysis of GFP

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Tobacco leaves (~ 10 mg) sampled 3 days after infiltration were ground in 150 µl sample buffer (Wako Pure Chemical Industries, Osaka, Japan) containing 5% β-mercaptoethanol. Samples were denatured at 98 °C for 2 min and proteins were separated by 10% polyacrylamide gel (SuperSep™Ace, Wako Pure Chemical Industries) electrophoresis. Proteins were transferred to PVDF membranes (Immobilon, Millipore) by semidry electroblotting. Blots were probed with anti-GFP primary antibody (SAB4301138, Sigma-Aldrich Co. LLC) and alkaline phosphatase conjugated anti-mouse secondary antibody (A3562, Sigma-Aldrich Co. LLC) and visualized using WesternBlue® Stabilized substrate for alkaline phosphatase (Promega).
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