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36 protocols using xbridge beh c18

1

High-pH Reverse-Phase Peptide Fractionation

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The samples (n = 44) were reconstituted in 400 μL of 1.0 mol/L triethylammonium bicarbonate at pH 7.5 and injected into the chromatography system. Tryptic peptides were fractionated at high pH reverse-phase XBridge BEH C18 analytical column (250 mm × 4.6 mm, 130 °A, 5 μm, Waters Corporation, Milford, Massachusetts) equipped with an XBridge BEH C18 sentry guard cartridge. The separation was achieved at a flow rate of 0.5 μL/min in 10 mmol/L triethylammonium bicarbonate and water at pH 7.5 (solvent A) and 100% acetonitrile (solvent B). A multistep gradient with three linear gradients were used; from 0 to 5% (solvent) B in 10 minutes, 5% to 35% B in 60 minutes, 35% to 60% B in 15 minutes, and 70% B for 10 minutes before reaching the initial conditions. A total of 60 fractions were collected and recombined into 15 peptide fractions as previously described.10 (link) The samples were evaporated to dryness in a Speed-Vac concentrator and stored in −80 °C until LC MS/MS runs.
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2

Sensitive Peptide Identification by Orbitrap MS

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Peptides (0.375 μg) were injected on a trap column (40 × 0.1 mm, XBridge BEHC18, 5 μm; Waters, Milford, MA), desalted for 5 min at a flow of 4 μL/min, separated on a pulled-tip analytical column (150 × 0.075 mm, XBridge BEHC18, 3.5 μm; Waters), and heated to 50°C with a three-segment linear gradient of acetonitrile, 0.1% FA (B) in water, and 0.1% FA (A) as follows: 0–3 min 1–7% B, 3–53 min 7–25% B, 53–60 min 25–35% B, and then 80% B and re-equilibration at 0.4 μL/min (nanoACQUITY UPLC; Waters). Tandem mass spectrometry (MS/MS) spectra were acquired on Orbitrap Fusion (Thermo Fisher Scientific, Waltham, MA) operated in data-dependent mode with higher-energy collisional dissociation fragmentation (normalized collisional energy 25%) and MS/MS acquisition. MS spectra were acquired at resolution 60,000 and MS/MS spectra (MS/MS selection window 2 Da) at resolution 15,000. Peptides and proteins were identified using the Comet search engine, with PeptideProphet and ProteinProphet validation (20 ppm tolerance window for precursors and products, Cys alkylation and methionine oxidation as fixed and variable modifications, respectively).
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3

Comparative Peptide Separation Analysis

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Identical chromatographic conditions were used to allow direct comparison of the three MS methods. Following desalting on a C18 trap (Waters XBridge BEH C18, 5 μm, 0.075 × 40 mm), peptides were separated using an in house packed C18 column (Waters XBridge BEH C18, 3.5 μm, 0.075 × 100 mm) with an integrated electrospray emitter pulled using a laser micropipette puller (Sutter Instrument, Novato, CA). The column was kept at 50 °C. A nanoACQUITY UPLC (Waters, Milford, MA) was used for the separation with a linear gradient of solvents A and B (0.1% formic acid in water; solvent B −0.1% formic acid in acetonitrile). Peptide digest (0.25 μg) were injected onto the trap column at a flow of 3 μL/min of 99% solvent A. After 6 minutes the valve was switched, and the peptides were eluted from the trap column onto the analytical column at a flow rate of 0.6 μL/min. A multi-step gradient was applied as follows: linear 1 to 7% solvent B in 3 minutes, a linear gradient increasing solvent B from 7 to 25% in 16 minutes, followed by an increase from 25 to 35% B in 3 minutes. The column was subsequently washed for 3 minutes at 80% B and re-equilibrated at 99% A for 11 minutes.
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4

Offline Peptide Fractionation for Proteome and Methylome Analysis

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100 μg peptides (for proteome analysis) or 15 mg peptides (for methylome analysis) were off-line fractionated by bRP (basic Reverse Phase) using a Waters XBridge BEH C18 5 μm 4.6 × 250 mm column (Waters) or XBridge BEH C18 10 μm 10 × 250 mm column (Waters) on an Ultimate 3000 high-pressure liquid chromatography (HPLC) system (Dionex, Sunnyvale, CA, USA) operating at 1 mL/min or 2.5 mL/min. Buffer A (5 mM ammonium formate, pH 10) and buffer B (5 mM ammonium formate, pH 10, 90% (v/v) ACN) were adjusted to pH 10 with ammonium hydroxide. Peptides were separated by a linear gradient from 5% B to 35% B in 54 mins followed by a linear increase to 70% B in 6 mins. A total of 60 fractions were collected. For comprehensive proteomic analysis, the 60 fractions were concatenated to 20. For comprehensive methylome analysis, the 60 fractions were concatenated to 10. All the concentrated fractions were lyophilized.
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5

Quantification of Fluticasone Propionate by LC-MS/MS

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Liquid chromatography for fluticasone propionate was accomplished using a Shimadzu LC-20AD liquid chromatograph with an XBridge BEH C18 (2.5 μm 2.1 × 50 mm) analytical column (Waters) protected with a guard column. The mobile phase consisted of 0.1% ammonium hydroxide (mobile A) and methanol (mobile phase B), and used a gradient of 50% to 95% mobile phase B over 1.5 min. The flow rate was 0.3 mL/min and the total run time was 5 min. Compounds were detected using a Thermo TSQ Ultra triple quadrupole mass spectrometer equipped with a heated electrospray ionization source in the positive ion mode. The spray voltage was held at 4.0 kV and the vaporizer temperature at 300 °C. Fluticasone propionate and d5 fluticasone propionate (internal standard) were detected by multiple-reaction monitoring (MRM) using the transitions 501 ≥ 293 m/z and 506 ≥ 293 m/z, respectively. Calibration curves were fit using linear regression with 1/X2 weighting in Xcalibur® v. 2.0 (Thermo Fisher Scientific, Waltham, MA, USA).
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6

Quinoline-3-carboxylic Acid Amide Synthesis

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Example 85

[Figure (not displayed)]

To a solution of 6-methoxy-8-[4-(trifluoromethyl)phenoxy]quinoline-3-carboxylic acid (20 mg, 55 umol, 1 eq), propan-2-amine (3.9 mg, 66 umol, 5.68 uL, 1.2 eq) and DIPEA (7.1 mg, 55 umol, 1 eq) in DCM (1 mL) was added HATU (25.1 mg, 66 umol, 1.2 eq). The reaction mixture was stirred at 25° C. for 1 hr. LC-MS showed starting material was consumed completely and one main peak with desired MS was detected. The reaction mixture was concentrated under reduced pressure. The mixture was diluted with water (5 mL) and the resultant mixture was extracted with EA (20 mL*3). The combined organic layers were dried over Na2SO4, filtered and concentrated to dryness under reduced pressure. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*25 mm*5 um; mobile phase: [water (0.04% NH3H2O 10 mM NH4HCO3)-ACN]; B %: 50%-80%, 7.8 min) to give the title compound as a white solid. LCMS (ESI): RT=0.911 min, mass calcd for C2H19F3N2O3 404.13 m/z, found 405.2 [M+H]+. 1H NMR (400 MHz, CDCl3) δ 9.03 (d, J=2.3 Hz, 1H), 8.54 (d, J=2.0 Hz, 1H), 7.62 (d, J=8.5 Hz, 2H), 7.16 (d, J=8.5 Hz, 2H), 6.98 (d, J=2.5 Hz, 1H), 6.93 (d, J=2.5 Hz, 1H), 6.08 (br d, J=6.8 Hz, 1H), 4.37 (qd, J=6.7, 13.8 Hz, 1H), 3.93 (s, 3H), 1.33 (d, J=6.5 Hz, 6H).

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7

Synthesis of a Quinoline-based Compound

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Example 87

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To a solution of 6-methoxy-8-[4-(trifluoromethyl)phenoxy]quinoline-3-carboxylic acid (20 mg, 55 umol, 1 eq), (2R)-2-aminopropan-1-ol (4.9 mg, 66 umol, 1.2 eq) and DIPEA (7.1 mg, 55 umol, 1 eq) in DCM (1 mL) was added HATU (25.1 mg, 66 umol, 1.2 eq). The reaction mixture was stirred at 25° C. for 1 hr. LC-MS showed starting material was consumed completely and one main peak with desired MS was detected. The reaction mixture was concentrated under reduced pressure. The mixture was diluted with water (5 mL) and the resultant mixture was extracted with EA (20 mL*3). The combined organic layers were dried over Na2SO4, filtered and concentrated to dryness under reduced pressure. The residue was purified by prep-HPLC (column: Waters Xbridge BEH C18 100*25 mm*5 um; mobile phase: [water (0.05% ammonia hydroxide v/v)-ACN]; B %: 40%-70%, 9 min) to give the title compound (9.27 mg, 39% yield) as a white solid. LCMS (ESI): RT=0.840 min, mass calcd for C2H19F3N2O4 420.13 m/z, found 421.0 [M+H]+. 1H NMR (400 MHz, CDCl3) δ 9.07 (d, J=2.0 Hz, 1H), 8.55 (d, J=2.0 Hz, 1H), 7.62 (d, J=8.5 Hz, 2H), 7.16 (d, J=8.5 Hz, 2H), 6.97 (d, J=2.5 Hz, 1H), 6.93 (d, J=2.5 Hz, 1H), 6.60 (br d, J=7.5 Hz, 1H), 4.44-4.32 (m, 1H), 3.93 (s, 3H), 3.86 (dd, J=3.5, 11.0 Hz, 1H), 3.71 (dd, J=5.5, 11.0 Hz, 1H), 1.35 (d, J=6.8 Hz, 3H).

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8

Analytical and Semi-preparative HPLC Protocols

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Analytical chromatography was performed on a Waters Alliance e2695 system, equipped with a 2998 PDA detector. The columns used were Waters XBridge BEH C18 4.6 mm × 50 mm, 2.5 μm or Waters Symmetry C18 4.6 mm × 250 mm, 3.5 μm. Solvent A was water, solvent B acetonitrile, and solvent C water containing 1% of trifluoroacetic acid. The Waters XBridge column was used under gradient conditions as follows: flow rate, 1.5 mL/min; column temperature, 40°C; t=0 min 80% A/10% B/10% C; t=5 min 0% A/90% B/10% C; t= 6 min 0%A/100% B/0% C; run time 8 min; UV detection from 200 to 800 nm. The Waters Symmetry column was used under isocratic conditions as follows: flow rate 1.5 mL/min; column temperature, 35°C; t=0 min 35% A/55% B/10% C.
Semi-preparative chromatography was performed on a Waters Autopurification system composed of a Binary Gradient Module 2545 pump, a 996 PDA detector and a 2767 Sample Manager. Solvent A was water with 0.1% TFA, solvent B acetonitrile with 0.1% TFA. The column used was a Waters XBridge OBD C18 10 mm × 100 mm, 5 μm and the conditions were as follows: t=0 min 55% A/ 45%B; t= 5 min 55% A/45%B; t= 5.5 min 50% A/50% B; t=12 min 50% A/50% B; t=12.5 min 45%A/55%B; t=17 min 45% A/55%B; t=19 min 0% A/100% B; run time 25 min; UV detection from 200 to 800 nm.
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9

HPLC-UV Optimization for Ibuprofen Detection

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An HPLC-UV system was optimized for the detection of IBU prior to the analysis. The liquid chromatography system used was a quaternary pump (Agilent, Santa Clara, CA, USA) with an autosampler and Xbridge BEH C18, 3.5 μm, 2.1 × 50 mm, Waters column. The column temperature was 50 °C and injector temperature was 20 °C. The Mobile phase A was 0.1% formic acid in water, and mobile phase B was 0.1% formic acid in acetonitrile. The flow rate was 0.800 mL/min. The injector wash was 50% acetonitrile. The retention time was 4.45 min, and the run time was 8.0 min. UV Detection at the wavelength of 220 nm was used. The IBU stock solution was prepared in the biorelevant medium at 250 ug/mL and used for the calibration curve at 1:250 v/v. Calibration samples were run prior to the analysis of the studied samples.
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10

Ketamine-loaded Polymeric Microparticle Characterization

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Accurately weighed amounts (~10 mg; n = 3) of the ketamine-loaded polymeric microparticles (Table 1) were dissolved in acetonitrile. The ketamine concentrations were quantified using HPLC (Agilent 1200 series) with UV detection at 280 nm. A gradient HPLC method was used for determining the drug loading (DL) using a Waters XBridge BEH C18 column: 3.5 µm, 3.0 × 150 mm. The calibration range was 5–800 µg/mL. The mean (±SD) correlation coefficients for ketamine calibration curves were 0.9998 (±0.0001).
Drug incorporation efficiency, expressed as actual drug loading (% w/w), and encapsulation efficiency (EE % w/w) were calculated using Equations (1) and (2), respectively. The individual values for three replicate determinations and their mean values are reported.
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