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Glyceraldehyde 3 phosphate dehydrogenase gapdh

Manufactured by Proteintech
Sourced in United States, China, Israel

Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is an enzyme that catalyzes the conversion of glyceraldehyde-3-phosphate to 1,3-bisphosphoglycerate during the glycolysis process. It is a widely used protein marker in molecular biology and biochemistry experiments.

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38 protocols using glyceraldehyde 3 phosphate dehydrogenase gapdh

1

Protein Expression Analysis by SDS-PAGE

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Equal amount of protein was separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes. Bovine serum albumin (5%) or skimmed milk was performed to block membranes. Primary antibodies include Fzd2 and CD44 (1:5,000; Abcam); interleukin-6 (IL-6), Stat3, p-Stat3 (Tyr705), non-phospho β-catenin, E-cadherin, vimentin, Slug, Wnt5a/b, Yes-associated protein 1 (Yap1), TGF-β1, Smad3, and ABCG2 (1:1,000; Cell Signaling Technology, Boston, MA, USA); Wnt3, Col1a1, and Col6a1 (1:1,000; Abcam); Zeb1 (1:500; Sigma-Aldrich, St. Louis, MO, USA); and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:500; Proteintech, Chicago, IL, USA) were incubated with the membranes overnight. SuperSignal Chemiluminescent Substrates (Thermo Fisher Scientific) and imaging systems were used to analyze the results.
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2

Macrophage Polarization Assay Protocol

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Bleomycin was purchased from Thermo Fisher Scientific. The following antibodies were used in Western blot and immunofluorescent staining. RGC32 polyclonal antibody was produced by Proteintech Group, Inc. (Chicago, IL) (16 (link)). Collagen type I alpha 1 (COL1A1) (D-13) and Lamin B (C-20) were obtained from Santa Cruz Biotechnology. Inducible nitric oxide synthase (iNOS) (4E5), Arginase (4E6) and CD3 were purchased from Abcam. IL-1β (3A6), NF-κB p65 (D14E12), Phospho-NF-κB p65 (Ser536), nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor (IκB) (44D4) and Phospho-IκB (Ser32) were from Cell Signaling Technology. Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was from Proteintech. F4/80 (BM8) was from BioLegend. Nuclei were stained with 4, 6-diamidino-2-phenylindole (DAPI, Vector Laboratories, Inc.). The secondary antibodies were from Cell Signaling Technology. M-CSF and IFNγ were purchased from R&D Systems. M-CSF was used at 10 ng/mL, and IFNγ was used at 100 ng/mL respectively. LPS was obtained from Sigma (Sigma-Aldrich, St. Louis, MO, USA) and used at 100 ng/mL.
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3

Protein Expression Analysis via Western Blot

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Bicinchoninic acid (BCA) protein assay was performed to determine protein concentrations. Equal amounts of protein lysates were segregated with 10% polyacrylamide gels (Bio-Rad, CA. USA) and transferred to 0.45 µm nitrocellulose membranes (Bio-Rad). Then, 5% BSA was used to block membranes for 1 h prior to incubation with primary antibodies: ITGBL1 (1:1000, Proteintech, China), Vimentin (1:1000, Cell Signaling, MA, USA), E-cadherin (1:1000, Proteintech, China), Snail (1:1000, Cell Signaling), TGF-β1 (1:2000, Abcam, China), and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:2000, Proteintech, China) at 4 °C overnight. Next, Tris-buffered saline containing 0.5% (w/v) Tween 20 buffer was used to wash membranes three times, and the membranes were incubated with the sheep anti-rabbit or sheep anti-mouse IgG secondary antibodies (1:10,000, LK, China) for 1 h. Subsequently, the protein bands were detected using an efficient chemiluminescence (ECL) kit (Thermo Scientific) following the manufacturer’s protocol. The GAPDH antibody served as a control. The results of the quantitative analysis were assessed using ImageJ software.
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4

Protein Expression Analysis in Hypothalamus

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Hypothalamic tissues and cell samples were dissociated in 200 μL of lysis buffer consisting of 1% phenylmethanesulfonyl fluoride (PMSF) (KGP610, KeyGEN, Nanjing, China), and the protein concentration was quantified by a BCA assay kit (Beyotime Biotech Inc., Shanghai, China). The proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Roche, Mannheim, Germany). Five percent skim milk in Tris Buffered Saline Tween-20 (TBST) was used to block the membranes for 1 h at room temperature. Following this, the membranes were incubated with the following primary antibodies at 4 °C overnight: PSD95 (1:1000, abcam, Cat# ab12093, Cambridge, UK), Synaptophysin (1:1000, Proteintech, Chicago, IL, USA), FKBP51 (1:1000, Proteintech, Chicago, IL, USA), Lamin B1 (1:1000, Proteintech, Chicago, IL, USA), Progesterone Receptor (1:1000, Bioworld, St. Louis, MO, USA), and Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:5000, Proteintech, Chicago, IL, USA). After washing with TBST, the membranes were incubated with appropriate horse radish peroxidase (HRP)-conjugated secondary antibodies for 1 h at room temperature. After being washed in TBST 4 times, protein bands were detected by enhanced chemiluminescence and Image J software (Version 1.43, NIH, Bethesda, MD, USA).
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5

Pharmacological Inhibition of HDAC2 Attenuates Inflammatory Cytokine-Induced Apoptosis

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HDAC2 inhibitor CAY10683 was purchased from Sellect (Houston, USA). DMEM basic and fetal bovine serum (FBS) were obtained from Gibco (NY, USA). Lipopolysaccharide (LPS, purity of 99%), tumor necrosis factor alpha (TNF-α, purity of 97%), and D-galactosamine (D-gal, purity of 98%) were purchased from Sigma (St. Louis, USA). Rabbit anti-rat/human HDAC2, bcl2, cytochrome c (cyt c), apoptosis protease activating factor 1 (apaf1), caspase 3/cleaved-caspase 3, caspase 9, cleaved-caspase 9, histone H3 (H3), and acetylated histone H3 (AH3) antibodies were obtained from Cell Signaling Technology (Boston, USA). Rabbit anti-rat/human bax antibody was obtained from Abcam (Cambridge, UK). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and cytochrome c oxidase subunit 4 isoform 1 (cox IV) antibodies were purchased from Proteintech (Wuhan, China). The goat anti-rabbit fluorescent secondary antibody (IRDye800) was obtained from LI-COR Biosciences Inc. (Lincoln, USA). RNAiso Plus, PrimeScript™ RT reagent, and SYBR Premix Ex Taq kits were purchased from TaKaRa (Dalian, China). The purified mitochondrial permeability transition pore (MPTP) fluorescence detection kit was purchased from GENMED (Shanghai, China).
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6

Western Blot Analysis of Protein Markers

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The total protein was extracted using ristocetin-induced platelet aggregation lysis buffer (Solabrio, China). A bicinchoninic acid kit (Thermo Fisher, China) was used to measure the total protein concentration. The total protein was denatured by being boiled in the loading buffer (CWBIO, China) at 100 °C for 10 minutes, and was then loaded onto a 10% sodium dodecyl-sulfate polyacrylamide gel electrophoresis gel. The proteins were thoroughly separated, then transferred to polyvinylidene fluoride membranes, blocked with 5% non-fat milk at room temperature for 1 h, and subsequently cultured with HINT1 (1:1,000, Abcam, China), MITF (1:1,000, Abcam, China), Akt (1:1,000, Cell Signaling Technology, USA), p-Akt (1:1,000, Cell Signaling Technology, USA), β-catenin (1:2,000, Proteintech, USA), or glyceraldehyde 3-phosphate dehydrogenase (GAPDH; 1:20,000, Proteintech Group, USA) at 4 °C overnight. After being washed 3 times with Tris Buffered Saline with Tween (T-BST), the membranes were incubated with horseradish peroxidase-conjugated antibodies (1:5,000, Affinity Bioscience, China) for 1 hour at room temperature. For chemiluminescence, the membranes were subsequently washed 3 more times with T-BST, and enhanced chemiluminescence reagent (NCM, China) was applied under the visualizer. All the experimental procedures were repeated 3 times.
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7

Protein Expression Analysis in Cells

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The cells were washed 3 times with ice-cold PBS and lysed with RIPA buffer (solarbio) containing phosphatase inhibitor on ice for 30 min. After ultrasonic lysis and centrifugation at 12 000 rpm at 4 ℃ for 15 min, the supernatant lysate with proteins was collected. Then proteins were separated by SDS-PAGE and transferred to polyvinylidene difluoride membranes. The membrane was blocked with 5% nonfat-dried milk solution at room temperature for 1 h and incubated with primary antibodies overnight at 4 ℃. The following primary antibodies were used: CDK6 (1:1000, CST), CYCLIN A (1:1000, CST), Akt (pan) (1:1000, CST), phospho-Akt (Thr308) (p-Akt) (1:1000 CST), mTOR (1:1000, CST), phospho-mTOR (p-mTOR) (1:1000, CST), COL I (1:1000, abcam), Runx2 (1:1000, CST), OPN (1:1000, Santa), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:10000, Proteintech). Then the membrance was incubated with anti-rabbit or anti-mouse secondary antibody conjugated with horseradish peroxidase for 1 h at room temperature. Finally, the protein bands were detected by enhanced chemiluminescence (Millipore) and band intensities were analyzed by Image J software.
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8

Western Blot Analysis of Membrane Proteins

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These experiments were performed as previously described [15 (link)]. Briefly, 24 hours after transfection, the protein samples (separate membrane and cytosolic samples) were extracted from cells using the temperature-induced phase separation method. A total of 100 μg lysates or subcellular fractions were separated using 6 to 10% sodium dodecyl sulfonate-polyacrylamide gel electrophoresis (SDS-PAGE), and then transferred to polyvinylidene fluoride (PVDF) membranes and probed with specific antibodies. The following antibodies were used: CaV1.2α1C (Alomone Labs, Jerusalem, Israel), ATP1A2 (Proteintech) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Proteintech). Signals of blots were collected through a Bio-RAD ChemiDox XRS detection system and analyzed by Quantity One analysis software (Bio-Rad, Hercules, CA, USA).
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9

Quantitative Analysis of FOSL1 Expression

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Total RNA was isolated from cells by using TRIzol reagent (Invitrogen, 15596026) according to the manufacturer’s instructions. For the reverse transcription reaction, cDNA was synthesized using 2 µg RNA with the PrimeScript RT Reagent Kit. RT-qPCR was performed using TB Green Premix Ex Taq II (Takara, RR820A) in a StepOnePlus real-time PCR instrument (Thermo Fisher Scientific). In this study, β-actin served as an internal control. The primer sequences used for RT-qPCR were as follows: FOSL1 (forward):
5′-GCCTGTGCTTGAACCTGA-3′, FOSL1 (reverse): 5′-TGCTGCTACTCTTGCGATG-3′; β-actin (forward): 5′-GATCATTGCTCCTCCTGAGC-3′, β-actin (reverse): 5′-ACTCCTGCTTGCTGATCCAC-3′. For Western blotting, the proteins of the cells were extracted using radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime, P0013B) according to the manufacturer’s instructions. Then, the proteins were separated by electrophoresis liquid and transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was blocked with 5% milk for 1 h, incubated with primary antibodies overnight, and then incubated with secondary antibodies for 1 h. The primary antibodies used in this study were FOSL1 (Cell Signaling Technology, #5281) and Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) (Proteintech, 10494-1-AP).
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10

Whole Cell Lysate Preparation and Protein Detection

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Whole cell lysates were prepared by lysis buffer (50mM Tris-HCl, 150mM NaCl, 1% Triton-X 100, 1mM MgCl2, MnCl2 and CaCl2, 1mM PMSF and 10mM sodium fluoride) [49 (link)]. The primary antibodies used included the following: DPT (HuaAn Biotechnology, Hangzhou, China), focal adhesion kinase (FAK) (Abcam, Cambridge, UK), p-FAK Tyr397 (Abcam, Cambridge, UK), Src (Cell Signaling Technology, Boston, MA), p-Src Tyr527 (Cell Signaling Technology, Boston, MA), ITGA3 (Abcam, Cambridge, UK), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Proteintech Group, Chicago IL). After incubating with the IRDye 680 anti-mouse (LI-COR, Lincoln, NE) and IRDye 800 anti-rabbit (LI-COR, Lincoln, NE) secondary antibodies for 1 hour at room temperature, the bands were detected by an Odyssey infrared imaging system (LI-COR, Lincoln, NE). Quantification was analyzed by using Image J software.
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